Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0872.Seq
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798...    29   3.6  
02_03_0184 - 16109854-16110261,16110342-16110565,16111600-161117...    29   3.6  
10_08_0576 - 18888702-18890165                                         29   4.8  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   6.3  
05_05_0392 + 24629528-24630442                                         28   6.3  
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272...    28   8.3  

>02_04_0035 +
           19078267-19078479,19078588-19078674,19079792-19079863,
           19080338-19080526,19080599-19080718,19081348-19081430,
           19081518-19081773,19081878-19082199,19086355-19086548,
           19087135-19087227,19089327-19089497,19089580-19089699,
           19090303-19090373,19090608-19090675,19091097-19091191
          Length = 717

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 8   DQVLPRVNADWADRLTAALRE 70
           +QV+ R++  W DRL AALRE
Sbjct: 601 EQVVDRIDTLWEDRLLAALRE 621


>02_03_0184 -
           16109854-16110261,16110342-16110565,16111600-16111717,
           16111847-16112203,16113363-16113683
          Length = 475

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 276 GRRHHLDARGMPSLFSPNGTCTAGNLSTLK 187
           GRR   + RG+P   + NG C   +L TL+
Sbjct: 64  GRRAAAELRGIPGRIAGNGACAVASLYTLQ 93


>10_08_0576 - 18888702-18890165
          Length = 487

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 443 SLLLGSPTLI*ILAYPLSTCIFTWIPS 523
           S+LLGSP +  IL+  L+T  F WIP+
Sbjct: 265 SILLGSPPVRVILSLSLATEQFGWIPT 291


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 387 YWFKTVKLCIYNLARRHVAPEGPGQVLRHGEAERLLRGRRHHLDARGMPSLFSPNGTCTA 208
           +W      C Y +  RHVA     + L +G +  LL   + ++ A G  S F+P G+C  
Sbjct: 136 FWSLLALKCFYRILARHVA----SRSLWNGRSSELL---QEYMGANGNESSFNP-GSCNP 187

Query: 207 GNLSTLK 187
             +   K
Sbjct: 188 DTMEGYK 194


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -3

Query: 332 PPKVLARCSATARQSAS--CAGAATTWMRGECPHCSALTVPAQRG 204
           PP+   R S    Q  +   +   TT  RG  PHCS+   P   G
Sbjct: 226 PPRPCGRASPRRAQETNSPASSTTTTQSRGPPPHCSSPPPPQDAG 270


>01_06_1795 -
           39925019-39926029,39926265-39926408,39927200-39927277,
           39927722-39927838,39927925-39927981,39928492-39928623,
           39928725-39928922,39929364-39929474,39929570-39929785,
           39929879-39930064,39930590-39931192
          Length = 950

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 41  ADRLTAALREDLLKTLGTDGVLLSASTPQPAPYHAAPLLRP 163
           ADR T A R+   ++  T+ V  + +TPQPA     P   P
Sbjct: 796 ADRKTQAGRKTAKESSSTEKVATANATPQPAKEQVIPSAPP 836


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,680
Number of Sequences: 37544
Number of extensions: 362529
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)