Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0872.Seq
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     70   2e-12
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           33   0.17 

>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 44/69 (63%)
 Frame = +2

Query: 47  RLTAALREDLLKTLGTDGVLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPL 226
           ++   LR++L + LG +GVL+  S P  A  H  P+  PFNFAY GIFNVL  P+ Q P 
Sbjct: 273 QMAQELRQELQRILGENGVLIFPSHPTLALRHNMPMFYPFNFAYTGIFNVLYMPSTQCPA 332

Query: 227 GLNSEGIPL 253
           GL+  G+P+
Sbjct: 333 GLSKSGLPM 341


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 35/64 (54%), Positives = 41/64 (64%)
 Frame = +2

Query: 62  LREDLLKTLGTDGVLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPLGLNSE 241
           LR  L   LG +GVLL  S P+ A  H  P+L P +F Y  IFNVLR P  Q PLGL+SE
Sbjct: 450 LRLQLESLLGDNGVLLFPSHPRTAMPHGMPVLSPLDFNYTSIFNVLRMPVTQCPLGLDSE 509

Query: 242 GIPL 253
           G+PL
Sbjct: 510 GMPL 513



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 256 IQVVAAPAQEALCLAVAEHLARTFGGYV--PPCK 351
           IQ+ AA   + L LAVA  L + FGG+    PCK
Sbjct: 515 IQIAAACNNDRLTLAVARALEQKFGGWSTWQPCK 548


>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 20   PRVNADWADRLTAALREDLLKTLGTDGVLLSASTPQPAPYHAAPLL 157
            PR+N  W +RL AA    +L  + T  +++  ST  P P  A+PL+
Sbjct: 910  PRLNPTW-ERLFAATLSGVLLCINTSDMMIDWSTKCPKPVFASPLV 954


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,679,303
Number of Sequences: 59808
Number of extensions: 410529
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)