Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0872.Seq
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical...    75   5e-14
U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   9.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   9.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   9.9  

>AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical
           protein Y53F4B.18 protein.
          Length = 535

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 34/64 (53%), Positives = 43/64 (67%)
 Frame = +2

Query: 62  LREDLLKTLGTDGVLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPLGLNSE 241
           L+  + + LGTDG+LL  S P  A YH  P+L PFNF Y  ++NVL  P VQ PLGL+S 
Sbjct: 438 LKRQVKELLGTDGILLFPSWPCTAMYHNEPILAPFNFCYTALWNVLSVPVVQCPLGLDSR 497

Query: 242 GIPL 253
           G+PL
Sbjct: 498 GLPL 501


>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 149 PLLRPFNFAYWGIFNVLRFPAVQV 220
           P LRP+ F+YW I + +  P  QV
Sbjct: 205 PFLRPYFFSYWYIHDKIELPKRQV 228


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  ALREDLLKTLGTDG--VLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPL 226
           A RE+ +  +  D   V+L  ++  PAP H  P       +Y  ++N+L F A  VP+
Sbjct: 385 AYREEFVGLMMKDNLDVILCPASIMPAPQHDIPSKVVSGVSYTCLYNLLDFGAGVVPV 442


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  ALREDLLKTLGTDG--VLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPL 226
           A RE+ +  +  D   V+L  ++  PAP H  P       +Y  ++N+L F A  VP+
Sbjct: 450 AYREEFVGLMMKDNLDVILCPASIMPAPQHDIPSKVVSGVSYTCLYNLLDFGAGVVPV 507


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
           protein K07E12.1b protein.
          Length = 12268

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 21  PGSTPTGLTASPQHSG 68
           PGS P G+T +P H+G
Sbjct: 719 PGSAPLGITPTPMHTG 734


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 21  PGSTPTGLTASPQHSG 68
           PGS P G+T +P H+G
Sbjct: 782 PGSAPLGITPTPMHTG 797


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 21  PGSTPTGLTASPQHSG 68
           PGS P G+T +P H+G
Sbjct: 782 PGSAPLGITPTPMHTG 797


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,237
Number of Sequences: 27780
Number of extensions: 300705
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)