Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0872.Seq
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64440.1 68418.m08095 amidase family protein low similarity t...    32   0.43 
At3g21200.1 68416.m02679 expressed protein                             30   1.3  
At1g08980.1 68414.m01001 amidase family protein similar to compo...    29   3.0  
At3g28430.1 68416.m03553 expressed protein non-consensus GC dono...    28   6.9  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    28   6.9  

>At5g64440.1 68418.m08095 amidase family protein low similarity to
           enantiomerase-selective amidase [Rhodococcus sp.]
           GI:152052; contains Pfam profile PF01425: Amidase
          Length = 607

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 191 NVLRFPAVQVPLGLNSEGIPL 253
           N+L FPA+ VP+G + EG+P+
Sbjct: 546 NLLGFPAISVPVGYDKEGLPI 566


>At3g21200.1 68416.m02679 expressed protein
          Length = 317

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   DDQVLPRVNADWADRLTAALREDLLKTLGTDGVL 106
           DD VL R++A W ++    ++ED L  +  D VL
Sbjct: 142 DDTVLKRLSATWREKFGEEVKEDSLYVVAVDRVL 175


>At1g08980.1 68414.m01001 amidase family protein similar to
           component of chloroplast outer membrane translocon Toc64
           [Pisum sativum] GI:7453538; contains Pfam profile
           PF01425: Amidase; supporting cDNA
           gi|11493701|gb|AF202077.1|AF202077
          Length = 425

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 86  LGTDGVLLSASTPQPAPYHAAPL--LRPFN---FAYWGIFNVLRFPAVQVPLGLNSEGIP 250
           LG  GVL+  + P P P+  A +  L  F    F+   I  V  F  V +PLGL+ E +P
Sbjct: 341 LGEKGVLVIPTVPGPPPHLQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLH-ENLP 399

Query: 251 L 253
           +
Sbjct: 400 V 400


>At3g28430.1 68416.m03553 expressed protein non-consensus GC donor
           splice site at exon 16
          Length = 837

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 103 HTVRTESLQEILPECCGEAVSPVGVDP 23
           H ++  +L  +LP  C EAV+ + VDP
Sbjct: 277 HILQHLTLPLLLPSLCSEAVNDISVDP 303


>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 98   GVLLSASTPQPAPYHAAPLLRPFNFAYWGIFNVLRFPAVQVPL 226
            G++L A TP    Y  A +   F  ++W +F+    P  Q+P+
Sbjct: 1329 GMMLVALTPN---YQIAGICLSFFLSFWNLFSGFLIPRPQIPI 1368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,387
Number of Sequences: 28952
Number of extensions: 269357
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)