Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0870.Seq
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CUQ8 Cluster: Similar to sp|P47139 Saccharomyces cere...    33   6.1  
UniRef50_Q50E62 Cluster: Aromatic-preferring amino acid transpor...    33   8.0  

>UniRef50_Q6CUQ8 Cluster: Similar to sp|P47139 Saccharomyces
           cerevisiae YJR098c singleton; n=1; Kluyveromyces
           lactis|Rep: Similar to sp|P47139 Saccharomyces
           cerevisiae YJR098c singleton - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 654

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 58  LRFALLTDYTMLILGLSYKKTPTLCLNLLGSIR 156
           L   +L DYT LI G+ Y   P+ C N+LG +R
Sbjct: 389 LAHKVLQDYTHLIRGIIYVGAPSQCPNILGPLR 421


>UniRef50_Q50E62 Cluster: Aromatic-preferring amino acid
           transporter; n=12; Tetrapoda|Rep: Aromatic-preferring
           amino acid transporter - Mus musculus (Mouse)
          Length = 488

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 528 VRYPAVNVLFLFLVCLRELSSFVVWFYLFSFK---RCIQTINNHL 403
           + +P +  L++FL  L   S F V+F LF F+   +CIQT   HL
Sbjct: 434 IDHPQIEFLYIFLFVL---SGFPVYFLLFHFQCQFKCIQTATMHL 475


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,661,724
Number of Sequences: 1657284
Number of extensions: 10981356
Number of successful extensions: 22681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22675
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)