Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0870.Seq
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.42 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    25   0.42 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.42 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.1  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 513 QLDILHNSYFFTLKYGKIELTICMLLHYAVEQQHLFAGFYFC 638
           Q++I+HN    T    +   ++ +L+  A +   +F   YFC
Sbjct: 219 QVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFC 260


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 513 QLDILHNSYFFTLKYGKIELTICMLLHYAVEQQHLFAGFYFC 638
           Q++I+HN    T    +   ++ +L+  A +   +F   YFC
Sbjct: 44  QVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFC 85


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 557 VF*CEKVAVV*DIQLSTYYFYFLFV*GNCQVLSCGFIFFRLNVAF 423
           +F C  +       L TYYFY+ F+     +L C + F+   + F
Sbjct: 84  LFYCPFIIFTVHFLLCTYYFYYAFI-----ILLCVYYFYYAFIIF 123



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 521 IQLSTYYFYFLFV*GNCQ--VLSCGFIFFRLNVAF 423
           I L  YYFY+ F+       +L C + F+ +++ F
Sbjct: 234 ILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLF 268


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 482 KQTRNKNNTLTAGYLTQQLLFH 547
           ++   K++ +  G+LTQQ + H
Sbjct: 219 EEVTQKDSPMNMGHLTQQQIIH 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,624
Number of Sequences: 336
Number of extensions: 3056
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)