Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0870.Seq
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.4  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   7.3  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.7  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.7  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 447 LFSFKRCIQTINNHLVHCVDLKLKQNKYL*NDRNQML 337
           +F  +  IQ   NH V   D+K K+NK + N  N  L
Sbjct: 23  IFQDEPMIQKFENHYVFKKDMKSKRNKEVKNQMNDWL 59


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 642 VNKNKIRQINVVVQRHSVRAYKSSTRFC 559
           V   K+ +I+ V+++  +   K STRFC
Sbjct: 86  VKATKLMKIDEVLEKAKIAKAKGSTRFC 113


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +3

Query: 237 ILRIVGYSGIVTIPPFRTE*RSYS*NKVMASVSPTSDFCHFINI--YSVLISSQRNALND 410
           I+  VG++G++     R        N  +  V P SD C  +++  Y VL+    ++ ++
Sbjct: 121 IIECVGWNGMIVSDKMRKSVFHMKKNDRIVLVRPNSDACPVLDVFGYRVLLGWPSDSEDE 180

Query: 411 Y**SECNV*TKKDKTTRQNLTIPSNKQEIKII 506
           +   E N+  K  +  R+ ++ PS ++ + ++
Sbjct: 181 W---EGNLNAKNYEENREPMS-PSPQEALPLM 208


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 522 YPAVNVLFLFLVCLRELSSFVVWFYLFSF 436
           YP  N  + F + +R LS F  +F+LFSF
Sbjct: 55  YPKRN--WWFFIKMRYLSFFFEFFFLFSF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,096
Number of Sequences: 5004
Number of extensions: 51780
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)