Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0870.Seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)                 29   4.4  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   29   4.4  
SB_23751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 7   LNNSHRIARGICSPFLRLRFALLTDYTMLILGLSYKKTPTLCLNLLGSI 153
           LN ++ +A  +   ++ L F ++  YT ++  L   K P  CLN  G +
Sbjct: 176 LNKAYTLALFVIE-YVILMFVIIFSYTRIVFYLRRNKIPRTCLNESGRV 223


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 588 RAYKSSTRFCRILV*KSSCCVRYPAVNVLFLFLVCLRELSSFVVWFYLFSFKRCIQTINN 409
           + Y +S   C+++   S CC+R     +    LVCL+  +     FY        ++I +
Sbjct: 17  KLYCTSNEKCKVIACDSGCCLRMHECKLSEHKLVCLKAKTPCTNSFYGCPAVLPRESIKS 76

Query: 408 HLVHC 394
           HL  C
Sbjct: 77  HLSIC 81


>SB_23751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 149 RFDQTRVNLILRITRQLIESKSILRF 226
           RFDQT +  +  + RQ  ++KSI RF
Sbjct: 13  RFDQTNLRPMAEVIRQRYDTKSITRF 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,350
Number of Sequences: 59808
Number of extensions: 353534
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)