Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0870.Seq
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28340.1 68417.m04057 hypothetical protein                          29   2.7  
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si...    29   3.6  
At5g56050.1 68418.m06993 hypothetical protein                          28   4.8  
At4g11610.1 68417.m01859 C2 domain-containing protein contains I...    28   4.8  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    28   4.8  
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    27   8.4  

>At4g28340.1 68417.m04057 hypothetical protein 
          Length = 159

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 351 CHFINIYSVLISSQRNALN 407
           C F+ +Y+VL+SS RN+LN
Sbjct: 28  CLFLVVYAVLLSSSRNSLN 46


>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 448

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 200 IESKSILRFTNYNSKNSGLFGNCYYTAVSHGITE 301
           +E+ +   F +Y  KNS   G C++   +H +T+
Sbjct: 409 LEAHASYAFNSYYQKNSRRVGTCFFGGAAHVVTQ 442


>At5g56050.1 68418.m06993 hypothetical protein 
          Length = 283

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 167 VNLILRITRQLIESKSILRFTNYNSKNSGLFGNCYYTAVSHGITELFL 310
           VN IL + RQ + S  I      N +   +FG  +Y+ + HGI +L L
Sbjct: 219 VNHILELRRQ-VTSNRIAYEIRSNFRVKAIFGMIHYSYMLHGICQLQL 265


>At4g11610.1 68417.m01859 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1011

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 513 VNVLFLFLVCLRELSSFVVWFYLF 442
           V+VLFL LVCL EL    ++ Y+F
Sbjct: 841 VHVLFLMLVCLPELILPTMFLYMF 864


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 513 VNVLFLFLVCLRELSSFVVWFYLF 442
           V+VLFL LVC  EL    V+ YLF
Sbjct: 859 VHVLFLILVCYPELILPTVFLYLF 882


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 347 IRCWTDRRHYFILGIAPLFRAKRRYSNNSRIA 252
           +RC+++  H  ++G   +F+A+  YS+  RI+
Sbjct: 27  VRCFSNSTHPSLVGREDIFKARLNYSSVERIS 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,794
Number of Sequences: 28952
Number of extensions: 246257
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)