Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0869.Seq
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    75   8e-15
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.67 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.7  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   8.2  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +2

Query: 98  KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYV 253
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYV 65



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 498 FGQIRYECGNYVESASYLY 554
           F Q +Y CGNY  ++  LY
Sbjct: 147 FAQFQYNCGNYGGASDLLY 165


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113  FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 232
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 385  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 507
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 358  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 477
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 394 MKTIETMRDPKTLINHLSTNKEYEFKIEMID 486
           MKTIE    P  L   +  +K Y   +E ID
Sbjct: 64  MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,289
Number of Sequences: 5004
Number of extensions: 44286
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)