Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0869.Seq
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 62 2e-10
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 61 7e-10
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 52 3e-07
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 30 1.6
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 2.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 4.8
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 28 4.8
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +2
Query: 95 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVM 256
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY M
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAM 55
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 498 FGQIRYECGNYVESASYLY 554
F + +++CGNY ++A YLY
Sbjct: 133 FAKFQFDCGNYSDAAVYLY 151
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 60.9 bits (141), Expect = 7e-10
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = +2
Query: 95 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVM 256
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY M
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAM 55
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +2
Query: 95 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVMTSE 265
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY M +
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 266 E 268
+
Sbjct: 62 K 62
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = -3
Query: 418 PSWFQLFSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQDRAFF*CHNIIYH 239
PS+ +L SL + F + ILAL VP V K++ +S++ +L RA F NI Y
Sbjct: 143 PSYRKLSSLRNQFPDIPILALTATAVPKVQKDV-ISSLCLRNPLIL--RASFNRPNIFYE 199
Query: 238 VSF 230
V +
Sbjct: 200 VRY 202
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 271 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPV 366
L P+EDT E ++RRGV L+E + +AV+ V
Sbjct: 392 LLPKEDTYVEFLKRRGVPLTERECSTNAVDIV 423
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 18 GCWFLPTTCVSIFIRIHENKLST*VTQNLI----*RLK*DSILIGISCFLY*NS*QQRRH 185
GC LP + + F+R+ E+ LST QN+I R S+ +SC L Q H
Sbjct: 108 GCPVLPLSLIQHFLRVCEHWLSTGNNQNIILLHCERGGWPSLAFMLSCLLIFKKLQSAEH 167
Query: 186 MT 191
T
Sbjct: 168 KT 169
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -3
Query: 418 PSWFQL----FSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQD 275
PS F+L FSL L A VS ++L H E +P+++H + L+ C+ +D
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKD 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,024
Number of Sequences: 37544
Number of extensions: 250169
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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