Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0869.Seq
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3) 40 0.002
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3) 33 0.13
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 31 0.92
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 29 2.1
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 2.8
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 2.8
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 27 8.6
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 27 8.6
SB_51353| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 27 8.6
>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 399
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 256 DIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 369
D+ + LYP+E+ P ++++R V+ EL++LQ EP++
Sbjct: 11 DVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPII 48
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 498 FGQIRYECGNYVESASYLYF 557
F + +YECGNY +A YLYF
Sbjct: 71 FAKFQYECGNYSGAAEYLYF 90
>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 215
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 498 FGQIRYECGNYVESASYLYF 557
F + +YECGNY +A YLYF
Sbjct: 8 FAKFQYECGNYSGAAEYLYF 27
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 265 RMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 441
R LYPE + + + V + ELQ A+ R L+++ + TI + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570
Query: 442 LSTNKEYEFKIEMIDSM 492
L ++ + + ++ +M
Sbjct: 571 LCASEGFREQGDLAAAM 587
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Frame = +1
Query: 307 QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 468
+R +L +++EL V+ + + +++ ++K ++ + D K TLI +T NKE+E
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913
Query: 469 KIEMIDSMYR 498
K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 355 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAK 507
+E ++L + V +T T + L N L KEY+ +E+ YRL K
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRK 758
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Frame = +1
Query: 280 EEDTPEEIIQRRGVVLSE--LQELQDAVEPVLRL------MQRDDVMKTIETMRDPKTLI 435
EED E+ I + LQEL++ VE + R RDD+ K ET+ K ++
Sbjct: 1215 EEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMV 1274
Query: 436 NHL---STNKEYEFK 471
N L +T ++ +F+
Sbjct: 1275 NQLKNEATEQKNDFR 1289
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +1
Query: 178 GDI*PVRAPAGK-VGDFEQN*HDRLCYDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDA 354
G++ ++A K + + +N D+ I L + PE +RG+ + +
Sbjct: 1035 GELRAIQAEISKAISEVTEN-DDKENVSIMNELKKNVEEPERFHNQRGI--DHETDFRKM 1091
Query: 355 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSM 492
V V +++ D+ + I+++++ ++ + NKE E KIE ++ M
Sbjct: 1092 VRAVFAIIE--DLKERIKSVKENTSISTEVLFNKEMEKKIEELEGM 1135
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 256 DIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 402
D ++YP DT EII + V + ++E + + VL ++R+ + KT
Sbjct: 218 DCPGVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266
>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 366 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHS 265
Y+L+CIL+ L+ KNY + F F ++H+
Sbjct: 57 YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHN 90
>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 329
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 366 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHS 265
Y+L+CIL+ L+ +NY + F F ++H+
Sbjct: 90 YFLHCILELLERGENYVRIFFADFSKGFDLVDHN 123
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +1
Query: 283 EDTPEEIIQRRG-----VVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHL 444
ED EE+++RRG ++L +L EL RL+ + ++ + + K L +
Sbjct: 497 EDKEEELLRRRGDLLVVMLLGDLAELDAWFTETRRLLDQPVIVVGSNSFLEAKQQLETYR 556
Query: 445 STNKEYEFKIEMIDSM 492
+KE E+K + +D +
Sbjct: 557 RISKELEYKQQGLDKL 572
>SB_51353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 561 DKSKDMMLTPHNFHIHSEF-GQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYII 385
+ SKD+ PH F I+S F G I H N K + R+ CF + I
Sbjct: 44 ENSKDLSSCPHTFIINSNFSGSEFDQILHHNQKDNTPPFGRQALHEKRLHFMKPCFPFKI 103
Query: 384 SLHE 373
S+ E
Sbjct: 104 SVRE 107
>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 710
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 366 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHS 265
Y+L+CIL+ L+ +NY + F F ++H+
Sbjct: 417 YFLHCILELLERGENYVRIFFADFSKGFDLVDHN 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,291
Number of Sequences: 59808
Number of extensions: 316833
Number of successful extensions: 801
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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