Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0869.Seq
         (588 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   1.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   7.3  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   9.7  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 523 EIMWSQHHIFTFVNWCCRQLTR 588
           + M  QH++  FV+WC   L R
Sbjct: 717 DCMSLQHYLNAFVHWCSSNLLR 738


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 198  SDWSYVSFAAKNSSKGNTRCRSRYCPILNVKSNFE 94
            ++WS V  AAK  +    RC    C IL  ++  E
Sbjct: 1001 TNWSNVCEAAKRITSKLQRCWDDECAILAAQAMLE 1035


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 576 ATAPVDKSKDMMLTP 532
           ATAPVD++K+ ++ P
Sbjct: 216 ATAPVDENKNEIIAP 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,334
Number of Sequences: 2352
Number of extensions: 10945
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)