Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0869.Seq
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    63   1e-10
At3g62050.1 68416.m06971 expressed protein contains Pfam profile...    28   4.0  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    28   5.3  
At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ...    27   7.0  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/56 (46%), Positives = 40/56 (71%)
 Frame = +2

Query: 89  SYSKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVM 256
           S   +DLT  I   LDRHLVFP+ EFL  ++ Y   ++L++K+++L++TNM+DY M
Sbjct: 4   SKQNYDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAM 59



 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 24/85 (28%), Positives = 48/85 (56%)
 Frame = +1

Query: 256 DIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLI 435
           DI + LY  ED P+E+++RR  V++ L+ L++A  P++  +   +    ++ +R  K   
Sbjct: 60  DIHKSLYHTEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPN---AVQELRADKQ-Y 115

Query: 436 NHLSTNKEYEFKIEMIDSMYRLAKF 510
           N     + Y+   + I+++Y+ AKF
Sbjct: 116 NLQMLKERYQIGPDQIEALYQYAKF 140



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 498 FGQIRYECGNYVESASYLY 554
           + + ++ECGNY  +A YLY
Sbjct: 137 YAKFQFECGNYSGAADYLY 155


>At3g62050.1 68416.m06971 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 157

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 351 ILKFLQFRKNYTSPLYNFFRSVFF-RIEHSSDVIT*SIMLV 232
           +++ L+ +KNY   +YNF   V++ + EHS      SI+L+
Sbjct: 117 VVQLLKSKKNYNFIIYNFILYVYYQKTEHSYLAPIPSILLI 157


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 540 LTPHNFHIHSEF-GQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYII 385
           + PHNF+IHS F G++  + D     L    C+  ++  F +  G +  +Y++
Sbjct: 207 IVPHNFYIHSYFAGESTSSSDVDKSSL----CQDHLFAIFGVFSGLSLVNYVL 255


>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 LAAKETYDQSELLQAKLEILSKTNMIDYVMTSEECSILKK 286
           L++  TY   EL +  ++ LSK    DYV+ S   S  KK
Sbjct: 318 LSSSRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYSSTKK 357


>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
           WD-40 repeats (PF0400);similar to guanine
           nucleotide-binding protein beta subunit GPBA (SP:P36408)
           [Dictyostelium discoideum (Slime mold)]; similar to
           katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
           [Homo sapiens]
          Length = 418

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 346 QDAVEPVLRLMQRDD-VMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKFAMN 519
           Q  V    RL   D+ +  T++  RDP   +  ++ N + + ++    S  R+++FA++
Sbjct: 190 QPGVAFCTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTRVSEFALD 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,689
Number of Sequences: 28952
Number of extensions: 218814
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)