Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0866.Seq
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   1.2  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    27   1.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   4.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   4.9  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   6.5  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    25   6.5  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   6.5  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   6.5  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   8.5  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   8.5  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 231 NSRSKLNTFADSGGWIYGPRLNDDIGRSKNGANGRRIDSSGTNSPNGT 374
           ++ S  NT   SGG ++      +   + N ++ RR   S  NSPN T
Sbjct: 226 HASSNYNTTHTSGGGVHSGAATPNAYVNNNPSSSRRESESPANSPNIT 273


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 170 DSRYPGGSYRALARR 214
           D  YPGG Y ALARR
Sbjct: 103 DQYYPGGDYDALARR 117


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 45   NAVVGAAQQ---WARQLQRTHSRHLEVLPWTNRFTKPR--IVGDSQQIVGIRAE 191
            +A VG  Q+   W   LQR HS  + ++   +R++  R  + G +++  G++ E
Sbjct: 893  SATVGNPQEFQVWLSALQRAHSYPIHLIVHEHRYSDLRKFVYGGAKEFNGLQEE 946


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 75   ARQLQRTHSRHLEVLPWTNRFTKP 146
            A Q+ +T  ++L+VLP  NRF KP
Sbjct: 1133 ANQVSKT-KKNLKVLPLYNRFEKP 1155


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 15  NLTLRANHRRNAVVGAAQQWARQLQRTHSRHLEVLPWTN 131
           N+   A   R+A V   ++WA  +   + +++ ++PW N
Sbjct: 607 NMYETAKAERDAHVVKVKEWADFVPALNKKNIVMIPWCN 645


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 271 PPLSAKVLSLLRLFATRSFSASKCAITSARIPTIC*LSPTM 149
           P L  K    LR F+T+S + +K    SA IP    + PTM
Sbjct: 12  PRLIVKHQFKLRSFSTKSLNDTKEKAPSALIPVGLLVKPTM 52


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 90  RTHSRHLEVLPWTNRFTKPRIVGDSQQIVGIRAEV 194
           R  S  ++VLP TN   + +     + ++G++AEV
Sbjct: 33  RPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEV 67


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = -1

Query: 493 IVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPF-GEFVPLESILRPLAPF 317
           I+  R    +RY+     I       Y+Y+  DRY    +  F   +  L+ +   L P 
Sbjct: 454 IIPRRGRGSSRYEINKNFINSDVPKSYTYDGYDRYGCLAVDSFYNIYNHLDPVAMRLNPT 513

Query: 316 FDLPMSSFSRGPYIQPPL-SAKVLSLLRLFA 227
            DL   SFS+G +    L + K  S+LR+ +
Sbjct: 514 VDL---SFSKGIHPTRILFTRKSSSILRMIS 541


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 406 ESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSS 296
           E+ DRY K H + F +    E++L P+  F +L +S+
Sbjct: 141 EAYDRYIKKHNISFADPKSSENLL-PILQFDELDVSA 176


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = -3

Query: 371 AVWRVCPAGVDSASVSTVL*SADVVVQPWAIYPAAAVGKGIELTAAICYEIILGEQVRDN 192
           +V  VCP G   A +ST++ +A+         P + +  G++L   +        +V++ 
Sbjct: 339 SVHNVCPKGYYLAIISTIVETAN---------PLSEIAPGLKLLGPVVESF---SRVQEI 386

Query: 191 FRPDTDYLLTISNDAWFGKSIGPWQHFQ 108
           + P TD      +  +  KS+    HF+
Sbjct: 387 YEPVTD---GTKDQCYISKSVDATSHFE 411


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 493 IVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESIL 335
           IVD+ +  QN    ++  +T     PY   +   Y +NH   F + + LE  L
Sbjct: 179 IVDSGIRPQNLPPNFSGRVTRLLMKPYIMAANRSYLRNHTKRFTDSIELEQRL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,912
Number of Sequences: 5004
Number of extensions: 44881
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)