Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0866.Seq
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0454 - 3234331-3236299,3237254-3238074                           30   1.2  
02_04_0327 - 22063453-22063725,22064093-22064404,22064724-220648...    30   1.2  
08_02_0055 - 11747627-11747896                                         28   4.9  
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    28   4.9  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   4.9  
04_01_0376 - 4929447-4929731                                           28   4.9  
01_06_1378 + 36788283-36789734                                         28   4.9  
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643...    27   6.5  
12_01_1037 + 10669757-10669807,10669906-10670010,10670105-10670356     27   8.6  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    27   8.6  
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668...    27   8.6  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    27   8.6  
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887...    27   8.6  
01_05_0457 + 22423998-22424039,22424139-22424415,22424540-224246...    27   8.6  

>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 54  VGAAQQWARQLQRTHSRHLEVLPWTNRFTKPRIVGDSQQIVGIRAEVIAHLLA 212
           +GA +Q A Q+Q+  +R LEV    NR+T   +V  S        +V A L A
Sbjct: 109 IGAFRQIASQIQQLKARVLEVSERRNRYTLHGLVPTSSDASSSTTKVDARLCA 161


>02_04_0327 -
           22063453-22063725,22064093-22064404,22064724-22064859,
           22065901-22065974,22066084-22066221
          Length = 310

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 129 WSMATLPDGANACAGAGAPTVAQHQQRHYGGDWPA 25
           WS +  PD A A AGA AP  ++   +  GG  PA
Sbjct: 20  WSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPA 54


>08_02_0055 - 11747627-11747896
          Length = 89

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 303 IGRSKNGANGRRIDSSGTNSPNG 371
           +G+S+  A+G+ +D+ GTNSP G
Sbjct: 51  VGQSRPAADGQ-VDAGGTNSPQG 72


>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 385 KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGP 281
           K+HLV + + +  + I R L   FDLP  S  R P
Sbjct: 29  KSHLVSYHDEIGHQDIERTLEHIFDLPHKSVVRPP 63


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 53   CWCCATVGAPAPAHAF-APSGSVAMDQ*IYQTTHRWR*SADSRYPGG 190
            CWC   V AP+PA  + + S  VA  + +      W  SA SR   G
Sbjct: 1076 CWCPVLVTAPSPALPWPSVSSMVAPPKQVRMQDDMWIVSASSRILDG 1122


>04_01_0376 - 4929447-4929731
          Length = 94

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 365 WRVCPAGVDSASVSTVL*SADVVVQPWAIYPAAAVGKGIELTA 237
           WR    G+D  +   V+  A V  QP+   PAA  G G+  +A
Sbjct: 3   WRPLSLGIDGDTRWDVVTQALVAAQPFCGNPAARSGGGVHASA 45


>01_06_1378 + 36788283-36789734
          Length = 483

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 379 HLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSAKVLSL 242
           H +  G F P   +  P+A    L MSS SR   I P L+ ++++L
Sbjct: 67  HYIQKGLFFPAPDV--PMASLVSLLMSSLSRALAIFPTLAGRLVTL 110


>02_05_0627 +
           30463452-30463774,30463841-30463956,30464125-30464371,
           30464458-30464555,30465216-30465284,30465752-30465820,
           30465913-30466028
          Length = 345

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 5   SSPESHPAGQSPP*CRCWCCATVGAPAPAHAFAPSGSVAMD 127
           SSP   PA  + P C  W       PAPA     S + A+D
Sbjct: 56  SSPPPLPAASAQPHCSRWVVVMERPPAPAGGGEVSRAEAVD 96


>12_01_1037 + 10669757-10669807,10669906-10670010,10670105-10670356
          Length = 135

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  LNLTLRANHRRNAVVGAAQQWARQLQRTHSR 104
           L L  + NH R+  +GA  Q A++  R H+R
Sbjct: 79  LVLGRKPNHSRSVGIGAVNQGAKERYRIHAR 109


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -1

Query: 454 TYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYI 275
           +YN +     G P   +       NH V    FVP  S L+P AP      SS   G   
Sbjct: 177 SYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVP-PSSLQPPAPMNLARPSSAFPGAGA 235

Query: 274 QPP 266
            PP
Sbjct: 236 MPP 238


>03_05_1050 -
           29966031-29966076,29966180-29966232,29966420-29966845,
           29966983-29967060,29967135-29967220,29969054-29969155,
           29969221-29969427,29970528-29970885,29971011-29971174,
           29971258-29971366,29971595-29971600
          Length = 544

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 282 GPRLNDDIGRSKNGAN-GRRIDSSGTNSPN 368
           GPR+   +G    G+N GR I S G + P+
Sbjct: 152 GPRITGSVGNIVGGSNIGRNISSGGLSVPS 181


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 282 GPRLNDDIGRSKNGAN-GRRIDSSGTNSPN 368
           GPR+   +G    G+N GR I S G + P+
Sbjct: 157 GPRITGSVGNIVGGSNIGRNISSGGLSVPS 186


>02_02_0315 +
           8872199-8872815,8873141-8873243,8873346-8873405,
           8873558-8873632,8873718-8873792,8873876-8873956,
           8874466-8874657,8874762-8874947,8875047-8875094
          Length = 478

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 352 PLESILRPLAPFFDLPMSSFSRGPYIQPPLSAKVLSLLRLFATRSFSASKCAITSA 185
           P+E      AP    P+S ++  P ++PP S   L+     AT++ S S+ A T +
Sbjct: 380 PVEETSTEAAPAEPTPLSPYTNYPDLKPPSSPSPLAPAE--ATKNESESESAATES 433


>01_05_0457 +
           22423998-22424039,22424139-22424415,22424540-22424622,
           22425378-22425437,22425610-22425718,22425805-22425857,
           22425953-22426033,22426125-22426237,22426421-22426475
          Length = 290

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 385 KNHLVPFGEFVPLESILRPLAPFFD 311
           KN ++ F EF+   S+  PLAP  D
Sbjct: 163 KNGVIEFDEFIHALSVFHPLAPLED 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,804
Number of Sequences: 37544
Number of extensions: 376893
Number of successful extensions: 1348
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)