Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0866.Seq
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38231| Best HMM Match : Yippee (HMM E-Value=4)                      32   0.31 
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           28   3.8  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     27   6.6  
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)                      27   6.6  
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)          27   8.8  

>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
          Length = 230

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 478 LNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPL 347
           L+  N  DT + +  +GK  P+    A+ Y+K HL   G  +PL
Sbjct: 147 LHALNGCDTTSGLANIGKTKPWDTLMANTYSKAHLETLGSVIPL 190


>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 478 LNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPL 347
           L+  N  DT + +  +GK  P+    A+ Y+K HL   G  +PL
Sbjct: 689 LHALNGCDTTSGLANIGKTKPWDTLMANTYSKAHLETLGSVIPL 732


>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 253 VLSLLRLFATRSFSASKCAITSARIPTIC*LSPTMRGLVNLLVHGNTSRWREC 95
           V+ LL+ FA RSF   +   +S R P    L  T +GL+++  + + + ++ C
Sbjct: 659 VVVLLKRFAQRSFRDLRSLESSLRTPVNSHLVETAQGLISIRAYRSRNTFQNC 711


>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = +3

Query: 24  LRANHRRNAVVGAAQQWARQLQRTHSRHLEVLPWTNRFTKP--RIVGDSQQIVGIRAEVI 197
           L  N   N+V     ++ R + R     +     ++R+  P   ++ +   I G   +V+
Sbjct: 470 LELNSNINSVYKMWDEFERNIHRIMDTCIPHKTTSSRYNLPGLTVLLEGSNIRGPSGDVL 529

Query: 198 A---HLLAENDLVANSRSKLNTFADSGGWIYGPRLNDDIG 308
                LL  NDL  N +S +  FAD    +YG  +N++ G
Sbjct: 530 GPLLFLLYVNDLPDNLKSSIRLFADD-ALLYGVIVNEEDG 568


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 504  W*PGLSTRVSISRTATIPTTPSSRWVKVRRTATNQP 397
            W PG  +   ++R + +P +    WV+  R   N P
Sbjct: 936  WSPGKDSNTILTRESALPLSSRGGWVRDNRRTPNSP 971


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 444 PSSRWVKVRRTATNQPIAITKTI-WCRLASLSRW--SRFCVR*HRSLICRCRRSAVG 283
           P S  V++ +T T Q   I + I  C++  L+    +  C     + +CRCR+  VG
Sbjct: 149 PQSLGVQLIKTKTKQSRKIRQHIDECKVTELNNCDANALCTNIFGTFVCRCRKGFVG 205


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 301 SSFSRGPYIQPPLSAKVLSLLRLFATRSFSASKCAITSARIPTIC*LSPTMRGLVNLLV 125
           +S S G  I   +  K+  +   F   + S S C I +A  P+IC     ++  VN+++
Sbjct: 12  TSVSLGRRIVGSIIRKLFVVFLCFRNTAISRSSCKIPAATFPSICDKDTNIKS-VNMII 69


>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +1

Query: 133 DLPNHASLEIVSR*SVSGRKLSRTCSPRMIS*QIAAVSSIPLPTAAAGYMAHG*TTTSAD 312
           DLP H+S     R +    + + T +    +   AA S      AAA   A    TT+A 
Sbjct: 87  DLPRHSSQVRTQRLTAPFIRTAATATAAAAA--TAAASVAATAAAAATAAATATATTTAT 144

Query: 313 QRTVLTDAESTPAGQTRQTA 372
             T    A +T  G T  TA
Sbjct: 145 AATATAAATATATGTTTATA 164


>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
          Length = 691

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 186 AEVIAHLLAENDLVANSRSKLNTFADSGG 272
           A  I H L +N ++ N   +LN   D GG
Sbjct: 324 AAAIGHALGKNTILKNINIRLNRLGDDGG 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,321
Number of Sequences: 59808
Number of extensions: 388041
Number of successful extensions: 1201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)