Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0866.Seq
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    28   0.063
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 0.063
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 47 CRCWCCATVGAPAPAHA 97
          C CWCC  +G P  + A
Sbjct: 11 CCCWCCDNLGGPGSSSA 27


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 248 QYLCRQRRLDIWPTAERRHRQIKERC*RTQNRLQRDKLAKRHQM 379
           +YL R+RR++I        RQIK      QNR  R K  K H+M
Sbjct: 31  RYLTRRRRIEIAHALCLTERQIKI---WFQNR--RMKWKKEHKM 69


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 457 DTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFV 353
           D    +  L + + Y Y S     K HL+P GE +
Sbjct: 160 DLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 457 DTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFV 353
           D    +  L + + Y Y S     K HL+P GE +
Sbjct: 160 DLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELL 194


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 267 GGWIYGPRLND 299
           G W++GPR  D
Sbjct: 89  GYWVFGPRFCD 99


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 QYLCRQRRLDIWPTAERRHRQIK 316
           +YL R+RR++I        RQIK
Sbjct: 31  RYLTRRRRIEIAHALCLTERQIK 53


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 114 LPDGANACAGAGAPTVAQHQQRHYG 40
           +P   +AC G+    + +    HYG
Sbjct: 185 VPTVTSACVGSAYTPLKEDHDDHYG 209


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 460 YDTYNTIITLGKGAPYSYESADRYNKNHL 374
           YD Y+ +  +   A  ++E  D+Y    L
Sbjct: 116 YDKYDLLENVNNAARINWEYLDKYKPTPL 144


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 QYLCRQRRLDIWPTAERRHRQIK 316
           +YL R+RR++I        RQIK
Sbjct: 293 RYLTRRRRIEIAHALCLTERQIK 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,790
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)