Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0866.Seq
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    29   1.3  
At5g01020.1 68418.m00004 protein kinase family protein contains ...    29   2.4  
At3g20140.1 68416.m02553 cytochrome P450 family protein contains...    28   4.1  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    27   7.2  
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ...    27   9.5  
At3g44330.1 68416.m04763 expressed protein                             27   9.5  
At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626...    27   9.5  
At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    27   9.5  
At1g31990.1 68414.m03934 expressed protein                             27   9.5  
At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 373 VPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSAKVLSLLRLFATRSFSA 209
           +P    +P+ S+L P      LP  SFS    +  P S K+++  +L A  S S+
Sbjct: 12  IPCSGLIPIRSLLNPSKSLSHLPRVSFS----VSSPHSLKLMTSTKLIAMASASS 62


>At5g01020.1 68418.m00004 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 410

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +3

Query: 39  RRNAVVGAAQQWARQLQRTHSRHLEVLPWTNRFTKPRIVGDSQQIVGIRAEVIAHLLAEN 218
           R  A V   Q  A+QLQ+ HSR +  L   +  + PR   DS+  +   A+VI   L E 
Sbjct: 7   RDEAAVFTPQAQAQQLQKKHSRSVSDL---SDPSTPRFRDDSRTPISY-AQVIPFTLFEL 62

Query: 219 DLVANSRSKLNTFADSG-GWIYGPRLNDDI 305
           + +  S        + G G +Y   ++D++
Sbjct: 63  ETITKSFRPDYILGEGGFGTVYKGYIDDNL 92


>At3g20140.1 68416.m02553 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 510

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 242 TAAICYEIILGEQVRDNFR--PDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPL 69
           +A++ YEI  G  V  +FR  P  +  L + +  +F    G +  F M ++   +L  P 
Sbjct: 92  SASVAYEIFRGHDVNISFRGNPPIEESLLVGSFGFFTAPYGDYWKF-MKKVMVTKLLGPQ 150

Query: 68  LRSTNNGITA 39
               + GI A
Sbjct: 151 ALQRSRGIRA 160


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 105 GANACAGAGAPTVAQHQQR 49
           G+++C GAGAPT+ Q  +R
Sbjct: 350 GSDSCQGAGAPTMFQAMRR 368


>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 556

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 282 GPRLNDDIGRSKNGAN-GRRIDSSGTNSP 365
           GPR+ + +G    G N GR I S G + P
Sbjct: 108 GPRITNSMGNMVGGGNLGRNISSGGLSIP 136


>At3g44330.1 68416.m04763 expressed protein
          Length = 565

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 451 YNTIITLGKGAPYSYESADRYNKN 380
           YN +  L  G PY+YE   ++ K+
Sbjct: 275 YNLLFALTSGGPYNYEGTQKWLKS 298


>At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626:
           Regulator of chromosome condensation (RCC1) signature 2;
           similar to Clast3 protein (GI:9857631) [Mus musculus]
          Length = 281

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 290 PWAIYPAAAVGKGIELTAAICYEIILGEQVRDNF--RPDTDYLLTISNDAWFGKSIGPWQ 117
           P+A   +A   +G+++T  +CY    G+ + + F     +  L+ ++ D + G+  G WQ
Sbjct: 205 PFAALFSAFKARGLKMTCLLCY-CSEGDNIPEAFLLAEASSKLMGLTPDKFHGEEGGKWQ 263


>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 124 HGNTSRWRECVRWSWRAHC-CAA 59
           H + S WREC   S R HC C A
Sbjct: 56  HKDQSGWRECYLCSKRLHCGCIA 78


>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -2

Query: 426 KVRRTATNQPIA--ITKTIWCRLASLSRWSRFCVR*HRSLICRCRRSAVGHISSRRCRQ 256
           K  R ATN  ++  I +  W  +A       F     R L+C CRRS    + S  C Q
Sbjct: 71  KTLRLATNTTLSSIIMRFCWLLVAIYLSCRAFF---RRPLLCYCRRSVSDCVPSSSCNQ 126


>At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 475

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 144 VW*IYWSMATLPDGANACAGAGAPTVAQHQQRHYG 40
           +W  Y ++AT    +  C+G GAP+   H  + YG
Sbjct: 11  LWKPYLALATQSRNSWFCSGGGAPSHHLHILKKYG 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,012
Number of Sequences: 28952
Number of extensions: 258355
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)