Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0865.Seq
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 141 HYYNDQIVDDNLIYLSPG-QIESSSKRHRSH*FNYYFSCSTIKYIL 7
           H+Y+  I   N+I  +P     SSS+RH  H ++Y+ + +TI  I+
Sbjct: 655 HHYHSAITTINIIITAPSPPSTSSSQRHHHHPYHYHSAITTIHIII 700



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 141 HYYNDQIVDDNLIYLSPGQIE-SSSKRHRSH*FNYYFSCSTIKYIL 7
           H+++  I   ++I  +P     SSS+RH  H  +Y+ + +TI  I+
Sbjct: 623 HHHHSAITTIHIIITAPSPPSTSSSQRHHHHPHHYHSAITTINIII 668



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 141 HYYNDQIVDDNLIYLSPGQIE-SSSKRHRSH*FNYYFSCSTIKYIL 7
           H+++  I+  ++I  +P     SSS+RH  H ++++ +  TI  I+
Sbjct: 101 HHHHSAIITIHIIITAPSPPSTSSSQRHHHHTYHHHSAIITIHIII 146



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 141 HYYNDQIVDDNLIYLSPGQIE-SSSKRHRSH*FNYYFSCSTIKYIL 7
           H+++  I+  ++I  +P     SSS+RH  H  +++ + +TI  I+
Sbjct: 459 HHHHSAIITIHIIITAPSSPSTSSSQRHHHHPHHHHSAITTIHIII 504


>SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 VLNCWRLTSGNISLSLSRFRIDDVIVLRSS*RFGNNL 344
           ++  WR  S     S+SRFR+DD  +      F N+L
Sbjct: 208 IVPLWRSFSFRFRSSISRFRVDDTRIRIKKVAFSNDL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,612,018
Number of Sequences: 59808
Number of extensions: 362635
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)