Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0865.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000266-1|AAC71170.1| 193|Caenorhabditis elegans Hypothetical ... 31 0.83
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 28 7.8
U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 28 7.8
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 28 7.8
AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacti... 28 7.8
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 28 7.8
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 28 7.8
AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 28 7.8
>AF000266-1|AAC71170.1| 193|Caenorhabditis elegans Hypothetical
protein W08F4.5 protein.
Length = 193
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 174 VYKIILFFLLA--HYYNDQIVDDNLIYLSPGQIESSSKRHRS 55
+Y I+LF LL H+ N + + D + L+P + +S HR+
Sbjct: 2 IYNILLFLLLVFVHFANSRTLTDLICKLNPSRCDSFRSNHRA 43
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +3
Query: 111 YRLQSDHYNNVPRERIK*FYKHSAQSSKCKRRYY*I*ITKLVLNCWRLTSGNISLSLSRF 290
+R +++ ++ I FY + + C +R Y + +T+L +TSG + + L RF
Sbjct: 376 FREEAEMLKDLQHPNIVRFYDYWESADLCGKRKYIVLVTEL------MTSGTLKMYLKRF 429
Query: 291 RIDDVIVLRS 320
+ ++ VL+S
Sbjct: 430 KRINIKVLKS 439
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +3
Query: 111 YRLQSDHYNNVPRERIK*FYKHSAQSSKCKRRYY*I*ITKLVLNCWRLTSGNISLSLSRF 290
+R +++ ++ I FY + + C +R Y + +T+L +TSG + + L RF
Sbjct: 376 FREEAEMLKDLQHPNIVRFYDYWESADLCGKRKYIVLVTEL------MTSGTLKMYLKRF 429
Query: 291 RIDDVIVLRS 320
+ ++ VL+S
Sbjct: 430 KRINIKVLKS 439
>Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical
protein F12F6.3 protein.
Length = 382
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 75 SIQSVLDSNISNYRLQSDHYNNVPRE 152
S QSV+ S I + L+S+HY N P E
Sbjct: 59 SPQSVIYSKILKHFLESNHYTNDPNE 84
>U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses
homolog 1 protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 75 SIQSVLDSNISNYRLQSDHYNNVPRE 152
S QSV+ S I + L+S+HY N P E
Sbjct: 55 SPQSVIYSKILKHFLESNHYTNDPNE 80
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 331 KRQLDLKTMTSSMRKRERDSEMFPLVS 251
KR+L+LK + RKR+R+ EM L S
Sbjct: 168 KRELNLKRTLAQKRKRQREKEMEELES 194
>AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacting
protein protein4, isoform c protein.
Length = 542
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 331 KRQLDLKTMTSSMRKRERDSEMFPLVS 251
KR+L+LK + RKR+R+ EM L S
Sbjct: 168 KRELNLKRTLAQKRKRQREKEMEELES 194
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 331 KRQLDLKTMTSSMRKRERDSEMFPLVS 251
KR+L+LK + RKR+R+ EM L S
Sbjct: 164 KRELNLKRTLAQKRKRQREKEMEELES 190
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 331 KRQLDLKTMTSSMRKRERDSEMFPLVS 251
KR+L+LK + RKR+R+ EM L S
Sbjct: 145 KRELNLKRTLAQKRKRQREKEMEELES 171
>AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate
polymerase protein.
Length = 382
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 75 SIQSVLDSNISNYRLQSDHYNNVPRE 152
S QSV+ S I + L+S+HY N P E
Sbjct: 59 SPQSVIYSKILKHFLESNHYTNDPNE 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,885
Number of Sequences: 27780
Number of extensions: 285788
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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