Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0864.Seq
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   1.3  
UniRef50_Q9VQG2 Cluster: Gamma-secretase subunit Aph-1; n=7; End...    33   5.3  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 444  NGRQRLGSAPGIADVHER 497
            +GRQRLGSAPGIA+VH R
Sbjct: 968  SGRQRLGSAPGIAEVHGR 985


>UniRef50_Q9VQG2 Cluster: Gamma-secretase subunit Aph-1; n=7;
           Endopterygota|Rep: Gamma-secretase subunit Aph-1 -
           Drosophila melanogaster (Fruit fly)
          Length = 238

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 VHCFWVYISDNSFEIFVYVHIQYIVYESLIYAL 401
           +H FW  I  N+F+   Y+HI Y+V+  L  +L
Sbjct: 160 LHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSL 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,236,826
Number of Sequences: 1657284
Number of extensions: 11565706
Number of successful extensions: 19100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19092
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)