Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0864.Seq
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0406 - 33703767-33704045,33705167-33705226,33705295-337053...    29   3.7  
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    28   6.4  

>03_06_0406 -
           33703767-33704045,33705167-33705226,33705295-33705378,
           33705991-33706093,33706427-33706487,33706993-33707026
          Length = 206

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  LYIFFMY*MYKLITYGIYNIKIKLYYVGCCKD 173
           L++FF Y   KL   G Y+ K K +   CC +
Sbjct: 103 LHVFFSYITVKLQFLGFYDFKSKTHQDACCPE 134


>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 511 QVGRMLVCLYGIKKIYNQLVMF*LNTHQK 597
           Q   M  CLYG  K+   LV+F  N H+K
Sbjct: 85  QTALMQACLYGHWKVVQILVLFKANIHKK 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,795
Number of Sequences: 37544
Number of extensions: 297561
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)