Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0864.Seq
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051658-1|AAK93082.1|  238|Drosophila melanogaster LD12037p pro...    33   0.29 
AF508786-1|AAN63815.1|  238|Drosophila melanogaster presenilin s...    33   0.29 
AE014134-464|AAF51212.1|  238|Drosophila melanogaster CG2855-PA ...    33   0.29 

>AY051658-1|AAK93082.1|  238|Drosophila melanogaster LD12037p
           protein.
          Length = 238

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 VHCFWVYISDNSFEIFVYVHIQYIVYESLIYAL 401
           +H FW  I  N+F+   Y+HI Y+V+  L  +L
Sbjct: 160 LHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSL 192


>AF508786-1|AAN63815.1|  238|Drosophila melanogaster presenilin
           stabilization factor protein.
          Length = 238

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 VHCFWVYISDNSFEIFVYVHIQYIVYESLIYAL 401
           +H FW  I  N+F+   Y+HI Y+V+  L  +L
Sbjct: 160 LHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSL 192


>AE014134-464|AAF51212.1|  238|Drosophila melanogaster CG2855-PA
           protein.
          Length = 238

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 VHCFWVYISDNSFEIFVYVHIQYIVYESLIYAL 401
           +H FW  I  N+F+   Y+HI Y+V+  L  +L
Sbjct: 160 LHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSL 192


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,377,613
Number of Sequences: 53049
Number of extensions: 537166
Number of successful extensions: 886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)