Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0864.Seq
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    29   4.4  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 303 VHCFWVYISDNSFEIFVY-VHIQYIVYESLIYALEF 407
           + CFW+ +   +  +FV  + + Y++Y +++Y L+F
Sbjct: 424 IQCFWLVLFALNKRVFVRRIWVFYVIYMAILYPLQF 459


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 426 YQKSSSNGRQRLGSAPGIADVHER*PLTSGGPYAR 530
           Y K + +G +    APG   +HE   +TSGGP  R
Sbjct: 573 YCKKTRDGYRHTYKAPGARKLHEILGVTSGGPGGR 607


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 426 YQKSSSNGRQRLGSAPGIADVHER*PLTSGGPYAR 530
           Y K + +G +    APG   +HE   +TSGGP  R
Sbjct: 573 YCKKTRDGYRHTYKAPGARKLHEILGVTSGGPGGR 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,093
Number of Sequences: 27780
Number of extensions: 292702
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)