Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0862.Seq
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   3.8  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    26   5.1  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   6.7  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   6.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.9  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 258 VYSLFWYKTFFYSHHFMYYIYKVV 187
           +YS FW + +F    F Y++  VV
Sbjct: 3   IYSSFWIRLYFTFRFFCYFLTSVV 26


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 225 YSHHFMYYIYKVVIVN-HLYVLQ 160
           + HH +YYIY  +++N + Y +Q
Sbjct: 378 FEHHDVYYIYNAIVLNDYAYWIQ 400


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 570 SLVSVMSSSNGFLRIVATDGNCVFVGWISSRCR 668
           S+VS M  SNG+L +  +DGN +F    SS+ R
Sbjct: 91  SIVS-MKYSNGWLMLALSDGNLLFRHIESSKLR 122


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 672 SLQITLQDDTGDWVGETVEEAPWWTGWF 755
           SL +  +D T  W  +  + +P+W  WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 696 DTGDWVGETVEEAPWWTGWFG 758
           D   +V  T E APW   WFG
Sbjct: 695 DPSKFVDRTPENAPWKPYWFG 715


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 258  VYSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLITNL 145
            VY L W   F++     Y I K+ I+N L+ + L+  L
Sbjct: 1323 VYLLVWDLIFYHFEETTYNI-KLSIINQLHAMDLLRPL 1359


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = +2

Query: 152 VMSCNTYKWFTITTL*M*YIKWC--E*KKVL---YQNNEYTWFEF*KKTLYLLTFYCVIL 316
           +MS  TY +F++  L   + K    + +K L   Y  + +   +F  + L ++ + CV  
Sbjct: 636 LMSIATYVYFSLVPLQSTFGKLSVKDSRKYLANKYFTSNFAPLKFDNQALSVIIWVCVFT 695

Query: 317 FKFSLSFKIMMLSCR-PKNKLTSI*TYLIYI 406
            KF+ S+  + LS R P   L+++  YL  I
Sbjct: 696 CKFAESYFFLTLSIRDPIIVLSTMRPYLCSI 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,823
Number of Sequences: 5004
Number of extensions: 58734
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)