Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0862.Seq
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0803 - 31842722-31843648                                         31   0.75 
07_03_0496 - 18758767-18760113                                         30   2.3  
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    28   7.0  

>02_05_0803 - 31842722-31843648
          Length = 308

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 573 LVSVMSSSNGFLRIVATDGNCVFVGWISSRCRSSLQITLQDDTGDWVGETVEEAPWWTGW 752
           L + + +  G + +V TD +    G+ SSRC           T  WVG + ++ P    W
Sbjct: 135 LAARVGTKRGGVALVFTDEDVTVEGFCSSRCGKHGSDASAGTTHIWVGNSAKQCPGQCAW 194


>07_03_0496 - 18758767-18760113
          Length = 448

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 308 HSKMLINTMFFFKTQTMYTHYSGTRLFFTRTI 213
           H ++L +TM+F  T  ++   SGTR  FTR+I
Sbjct: 400 HGEVLEDTMYFVDTPDVWDLKSGTRRPFTRSI 431


>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +3

Query: 573 LVSVMSSSNGFL--RIVATDGN-CVFVGWISSRCRSSLQITLQDDTG-DWV 713
           L S++ +S G+L  ++  + G  CV    I++ C S +  TLQD  G +W+
Sbjct: 239 LASIILASVGYLLGQVNVSQGAVCVLASQIANFCESYIGATLQDKEGFEWI 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,933
Number of Sequences: 37544
Number of extensions: 322515
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)