Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0862.Seq
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2159| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=3.7)            30   2.3  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_2159| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=3.7)
          Length = 443

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 615 VATDGNCVFVGWISSRCRSSLQITLQDDTGDWVGETVEEAP 737
           VATDG CV       R   ++ +T  DD G     ++ +AP
Sbjct: 147 VATDGYCVITDGAEDRLPFNVSVTKMDDDGQQFLLSISDAP 187


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 261 HVYSLFWYKTFFYSHHFMYYIY 196
           + Y  ++Y  ++Y HH+ YY Y
Sbjct: 117 YYYYYYYYYYYYYYHHYYYYYY 138



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 261 HVYSLFWYKTFFYSHHFMYYIYKVVIVNHLY 169
           + Y  ++Y  ++Y +++ YY Y     +H Y
Sbjct: 104 YYYYYYYYYYYYYYYYYYYYYYYYYYYHHYY 134


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 261 HVYSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLITN 148
           H  S+  Y    Y HH  ++ +     +HL+++  IT+
Sbjct: 161 HYRSMIVYSRHLYHHHHQHHYHPTATSHHLFIIFTITS 198


>SB_53273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 343 HDAKLSTKKQTNKYLNLFNLYCEVLNRRPKLKL*ANKMLFLV 468
           H  K    ++TN  + L   +C VL RR + KL A K++ ++
Sbjct: 37  HSRKAKLSRKTNFIVELVGSFCSVLQRRFE-KLAAGKLMSII 77


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 261 HVYSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQL 157
           + Y  ++Y  ++Y +++ YY Y        Y LQL
Sbjct: 10  YYYYYYYYYYYYYYYYYYYYYYYCCYFQQEYQLQL 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,827,399
Number of Sequences: 59808
Number of extensions: 400983
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)