Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0862.Seq
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 107 STFTMTRNYKSNSKLVMSCNTYK 175
           S+ +   NY +N+   + CN YK
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 107 STFTMTRNYKSNSKLVMSCNTYK 175
           S+ +   NY +N+   + CN YK
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 25  IMKVYIALY*VDIKN*INLHCYENGNEFNFYN 120
           ++K +I L+  + ++ +     ENG EF+ +N
Sbjct: 149 VLKSFIDLFNANARSVVEKMRKENGKEFDCHN 180


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 702 GDWVGETVEEAPWWTGW 752
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEPSPKTPWYKGW 214


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 702 GDWVGETVEEAPWWTGW 752
           GD + E   + PW+ GW
Sbjct: 125 GDNMLEVSSKMPWFKGW 141


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 299 FYCVILFKFSLSFKIMMLSCRPKNKLTSI 385
           F  +I+  ++ +    ++  RPK KLT I
Sbjct: 646 FAMIIVASYTANLAAFLVLERPKTKLTGI 674


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 702 GDWVGETVEEAPWWTGW 752
           GD + E   + PW+ GW
Sbjct: 141 GDNMLEVSSKMPWFKGW 157


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 702 GDWVGETVEEAPWWTGW 752
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEVSSKMPWFKGW 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,637
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)