Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0861.Seq
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,...    68   1e-10
UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46; Panc...    66   5e-10
UniRef50_A3YVT0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_A7S562 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.2  
UniRef50_Q94K80 Cluster: Putative uncharacterized protein At4g35...    32   8.1  

>UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,
           isoform G isoform 3; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to CG7107-PG, isoform G isoform 3 -
           Tribolium castaneum
          Length = 352

 Score = 68.1 bits (159), Expect = 1e-10
 Identities = 38/85 (44%), Positives = 43/85 (50%)
 Frame = +2

Query: 254 VKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 433
           ++EYI EWRKQRA            QAKRK+S                            
Sbjct: 54  LREYITEWRKQRAKEEDELKKLKEKQAKRKISRAEEERKMAERKKQEEERRIREIEEKKQ 113

Query: 434 XDIEEKRQRLEEAEKKRQAMLQAMK 508
            DIEEKRQRLEEAEKKRQAM+QA+K
Sbjct: 114 RDIEEKRQRLEEAEKKRQAMMQALK 138



 Score = 50.0 bits (114), Expect = 4e-05
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +3

Query: 186 QEGEGDPEFIKRQDQKRSDLDEQ*RNTST 272
           +EG GDPEFIKRQDQKRSDLDEQ R   T
Sbjct: 31  EEGAGDPEFIKRQDQKRSDLDEQLREYIT 59


>UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46;
           Pancrustacea|Rep: Troponin T, skeletal muscle -
           Drosophila melanogaster (Fruit fly)
          Length = 397

 Score = 66.1 bits (154), Expect = 5e-10
 Identities = 39/92 (42%), Positives = 44/92 (47%)
 Frame = +2

Query: 254 VKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 433
           +KEYI EWRKQR+            QAKRKV+                            
Sbjct: 53  LKEYITEWRKQRSKEEDELKKLKEKQAKRKVTRAEEEQKMAQRKKEEEERRVREAEEKKQ 112

Query: 434 XDIEEKRQRLEEAEKKRQAMLQAMKMPARPDP 529
            +IEEKR RLEEAEKKRQAMLQAMK   +  P
Sbjct: 113 REIEEKRMRLEEAEKKRQAMLQAMKDKDKKGP 144



 Score = 50.8 bits (116), Expect = 2e-05
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 174 PAPKQEGEGDPEFIKRQDQKRSDLDEQ 254
           P    EGEGDPEFIKRQDQKRSDLD+Q
Sbjct: 26  PQTPAEGEGDPEFIKRQDQKRSDLDDQ 52


>UniRef50_A3YVT0 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. WH 5701|Rep: Putative uncharacterized
           protein - Synechococcus sp. WH 5701
          Length = 109

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 455 QRLEEAEKKRQAMLQAMKMPARPDPTSAS 541
           QRLE+ E++ Q + Q +  PARPDP   S
Sbjct: 35  QRLEQLEQRLQQIEQRLASPARPDPADPS 63


>UniRef50_A7S562 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 423

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRRAK 556
           +EE+R+RLE  EK+RQA  QAM+     D  +A++  AK
Sbjct: 140 LEEERKRLENLEKERQAAQQAMQ--EAHDKLAAAEEAAK 176


>UniRef50_Q94K80 Cluster: Putative uncharacterized protein
           At4g35890; n=2; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein At4g35890 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 523

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 174 PAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 344
           PAPKQ G  +P       ++RS       + S NG  S P  + S   L    PS R
Sbjct: 182 PAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPR 238


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,681,478
Number of Sequences: 1657284
Number of extensions: 4998525
Number of successful extensions: 17983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17935
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)