Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0861.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   1.9  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   2.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.4  

>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 443 EEKRQRLEEAEKKRQAMLQ-AMKMPARPDPTSASK 544
           +E+R +  + +K R A LQ  ++ P RP P++AS+
Sbjct: 87  DEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASE 121


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 443 EEKRQRLEEAEKKRQAMLQA 502
           EEKR+++EE++K  + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 105 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVESA 1
           CW  I    G S  L+  AL+L PA+    NV S+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,629
Number of Sequences: 5004
Number of extensions: 19334
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)