Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0861.Seq
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    29   2.6  
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   3.4  
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680...    28   6.0  
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713...    27   7.9  

>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 180 PKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKR 326
           P +EGE  P   KRQ +K+    +    T+T G+N   R   S+ A KR
Sbjct: 76  PPKEGETAPRQSKRQPKKKVPSKDDEAPTNTTGSNKSER---SAKAKKR 121


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 168 TKPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNA 317
           TK AP +  E  P+  + ++ +   L     +T+ NG N+G    + S+A
Sbjct: 257 TKEAPPKPTEASPQLNQVKESESDPLISDSLSTAENGGNAGDDEALKSSA 306


>06_01_0888 +
           6805071-6805485,6806202-6806374,6806501-6806549,
           6806654-6806820,6806919-6807002,6807097-6807135
          Length = 308

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 446 EKRQRLEEAEKKRQAMLQAMKMPARPDPTSAS 541
           E +++ EEAE+K     +  K PA P P S++
Sbjct: 91  EAKRKAEEAERKAAEAERKAKAPAEPKPESSA 122


>08_02_0545 +
           18470313-18470669,18470901-18471095,18471183-18471362,
           18471462-18471656,18472081-18472179,18472271-18472780,
           18472896-18473225
          Length = 621

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 437 DIEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRRAK 556
           +IE+ +  LE   KK+QA  QAMK  AR +  +  K + K
Sbjct: 477 EIEKNKLALER--KKKQAEKQAMKAAARAEKEAEKKLKEK 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,638
Number of Sequences: 37544
Number of extensions: 151427
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)