Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0861.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           30   1.1  
SB_40386| Best HMM Match : BAR (HMM E-Value=0)                         30   1.5  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   3.5  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)              28   4.6  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   6.1  
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           27   8.1  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRRAK 556
           +EE+R+RLE  EK+RQA  QAM+     D  +A++  AK
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQ--EAHDKLAAAEEAAK 355


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 443 EEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
           EE+RQ+ EEA K+R+  L A K P     +S  +RR
Sbjct: 537 EERRQKREEARKRREEKL-AKKGPTTSTSSSRKRRR 571


>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
          Length = 369

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 177 APKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMS-SNALKRS 329
           APKQ  E +PE +  Q +K  + DE+  N  T+   + P  + S S+ LK S
Sbjct: 256 APKQAPE-EPENVPEQHEKAPESDEEQGNGETSAKGTNPLAKSSDSDKLKPS 306


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 189  EGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 356
            E E DP+   R    RS+   +  NT  N AN+GP    SSN      P+ R   P
Sbjct: 984  EIECDPDVAMRLATLRSEASFE--NTLNNQANAGPSEETSSNPKSYLVPAPRKAKP 1037


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 210  FIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSA 341
            F KRQ QK S L +  +     G + G  R  S +  K+ RP +
Sbjct: 2535 FEKRQLQKPSSLQQSKKKDDPAGGSHGKNRSTSFSGEKKKRPKS 2578


>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
          Length = 982

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 168  TKPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTN 275
            T+P PKQ G  +    + +D KR+D  +  +NT  N
Sbjct: 937  TEPGPKQIGPDESSLNRERDTKRADCQQ--KNTPAN 970


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 374 RGAFLLRHEKPCAWPASL*GV 312
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 180 PKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 344
           P+++   D     R+D KRSD +   R    + +N+ PRR   S+++  S    R
Sbjct: 705 PRRDKRSDSNATPRRD-KRSDSNATLRRDKKSDSNATPRRDEKSDSITSSSHETR 758


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 443  EEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRRA 553
            EE+RQ+ EEA K+R+  L A K  ++      SK R+
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERS 1379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,328
Number of Sequences: 59808
Number of extensions: 167701
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)