Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0861.Seq
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC053542-1|AAH53542.1| 628|Homo sapiens DYNC1I1 protein protein. 32 1.6
BC037854-1|AAH37854.1| 628|Homo sapiens DYNC1I1 protein protein. 32 1.6
BC032945-1|AAH32945.1| 628|Homo sapiens DYNC1I1 protein protein. 32 1.6
BC022540-1|AAH22540.1| 625|Homo sapiens DYNC1I1 protein protein. 32 1.6
AK091339-1|BAC03639.1| 628|Homo sapiens protein ( Homo sapiens ... 32 1.6
AF123074-1|AAD26852.1| 608|Homo sapiens cytoplasmic dynein inte... 32 1.6
AF063228-1|AAC33443.1| 645|Homo sapiens cytoplasmic dynein inte... 32 1.6
AC022261-1|AAS01994.1| 142|Homo sapiens unknown protein. 32 1.6
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 31 2.8
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 31 2.8
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 4.9
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 4.9
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 4.9
>BC053542-1|AAH53542.1| 628|Homo sapiens DYNC1I1 protein protein.
Length = 628
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>BC037854-1|AAH37854.1| 628|Homo sapiens DYNC1I1 protein protein.
Length = 628
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>BC032945-1|AAH32945.1| 628|Homo sapiens DYNC1I1 protein protein.
Length = 628
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>BC022540-1|AAH22540.1| 625|Homo sapiens DYNC1I1 protein protein.
Length = 625
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>AK091339-1|BAC03639.1| 628|Homo sapiens protein ( Homo sapiens
cDNA FLJ34020 fis, clone FCBBF2002904, highly similar to
DYNEIN INTERMEDIATE CHAIN 1, CYTOSOLIC. ).
Length = 628
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>AF123074-1|AAD26852.1| 608|Homo sapiens cytoplasmic dynein
intermediate chain 1 protein.
Length = 608
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>AF063228-1|AAC33443.1| 645|Homo sapiens cytoplasmic dynein
intermediate chain 1 protein.
Length = 645
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>AC022261-1|AAS01994.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKMPARPDPTSASKRR 550
I E+++R EE KK++A +Q K P + D KRR
Sbjct: 21 IREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRR 57
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.1 bits (67), Expect = 2.8
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 344
+P+P++ + + E K + + RS + R S + +++ PRRR S + +R P R
Sbjct: 258 EPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRRRPSPRRR 315
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 31.1 bits (67), Expect = 2.8
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 344
+P+P++ + + E K + + RS + R S + +++ PRRR S + +R P R
Sbjct: 258 EPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRRRPSPRRR 315
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 4.9
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALK---RSRPSA 341
+P+P++ + + E K Q + RS + R S + +++ PRRR S + R RPS
Sbjct: 258 EPSPEKNSKKEKEKEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSP 317
Query: 342 R 344
R
Sbjct: 318 R 318
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNAL--KRSRPSAR 344
+P+P++ + + E K + + RS + R S + +++ PRRR S+ + R RPS R
Sbjct: 258 EPSPEKNSKKEQEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSDKMYSPRRRPSPR 317
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNAL--KRSRPSAR 344
+P+P++ + + E K + + RS + R S + +++ PRRR S+ + R RPS R
Sbjct: 258 EPSPEKNSKKEQEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSDKMYSPRRRPSPR 317
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,499,710
Number of Sequences: 237096
Number of extensions: 851068
Number of successful extensions: 2542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2542
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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