Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0861.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln (neur...    31   0.76 
AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.    31   0.76 
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical p...    24   5.0  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.2
           protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 207 EFIKRQDQKRSDLDEQ*-----RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 356
           +FI   D +R +++E+      R    N  +   RRR +S  L+R  P  +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278


>AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 207 EFIKRQDQKRSDLDEQ*-----RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 356
           +FI   D +R +++E+      R    N  +   RRR +S  L+R  P  +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 443 EEKRQRLEEAEKKRQAMLQAM-KMPARPDPT 532
           E++R+RL E ++K  AM  A  ++PA P PT
Sbjct: 174 EQRRKRLREEKEKENAMRAASPEIPAGPPPT 204


>U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical
           protein F09E5.12 protein.
          Length = 312

 Score = 24.2 bits (50), Expect(2) = 5.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +3

Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPS 338
           +PAP Q    D E ++   +K  D  E     ++  +N+G    M S +     P+
Sbjct: 159 RPAPAQRENEDDEDVEIDVEKDDDEPEDPDGRNSVSSNAGSDNSMRSPSFSPPSPA 214



 Score = 22.2 bits (45), Expect(2) = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 9   PHSNVAVLPVQEPVPS 56
           PH N+  +PV  P P+
Sbjct: 148 PHQNLQNMPVPRPAPA 163


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = +2

Query: 440 IEEKRQRLEEAEKKRQ 487
           +EEK++RL+EA+KKR+
Sbjct: 543 LEEKKRRLQEAKKKRR 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,350
Number of Sequences: 27780
Number of extensions: 115507
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)