Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0860X.Seq
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 32 0.044
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 27 0.94
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 1.6
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 2.2
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 6.7
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 24 8.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 24 8.8
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 24 8.8
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 8.8
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 8.8
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 8.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 24 8.8
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 31.9 bits (69), Expect = 0.044
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -2
Query: 274 TTSNSWSPQGSVLSPFLFSLFVNDI-PRSPPTNLALFADDTTVYYSSRNKSLIAKKLQSA 98
+T+ S S G ++ P + +L + I P S LF D + + NKS + +L
Sbjct: 248 STAYSLSSGGPIVHPSINALLLTPICPNSLSFRPVLFPDTFKISIETSNKSRVRPQLSID 307
Query: 97 ALALGQWFRKWRIDINPAKSTAV 29
LG RIDI K A+
Sbjct: 308 GRPLGLTDIGQRIDITSVKDNAI 330
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 0.94
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = -2
Query: 289 NPLFPTTSNSWSPQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSRNKSLIAKK 110
N LFP+ S+S S++ F F FVN SP T++ L D + + IAK
Sbjct: 318 NRLFPSISDSTIC--SLIGGFFFLRFVNPAIISPQTSMLL--DSCPSDNVRKTLATIAKI 373
Query: 109 LQSAA 95
+QS A
Sbjct: 374 IQSVA 378
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 128 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLH 6
+P REE S + P + V + PS+K G IS K++
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIY 145
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 251 RAPAVRSRGEERVPSTRYRKERFDKKSRMMSTRLSGTPML-NSLKIK 388
R +RSR E++ ++ +++R DKK+ +R+ P + NS K
Sbjct: 11 RTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYK 57
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 280 RAGSLDSISKRAVRQEVPY 336
RAG+ D + + A++ VPY
Sbjct: 141 RAGAFDQLKQNAIKARVPY 159
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/41 (24%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 360 VPDSLVLIIRDFLSNRSFRY-RVEGTRSSPRLLTAGARKAL 241
+P + ++ +FL+NRS+R+ +++ +++ RL +K++
Sbjct: 63 IPRAWLIPFHEFLNNRSYRFPKLDYSQTPIRLAIRSGKKSV 103
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 349 SRAHHTGLLVEPLFSISSRGNPLFPTTSNSWSPQGS 242
+++H+T L+ EPL S G +P+ S S S S
Sbjct: 85 AQSHNTALITEPLTSFIG-GTSQYPSASFSTSQHPS 119
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 350 LSGTPMLNSLKIKPLCQTLSNA 415
L G P ++S K+K LC L +
Sbjct: 756 LKGKPWMDSAKVKKLCSLLKKS 777
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 235 SPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSRNKSLIAKKLQ 104
+P L + +D+P + F D T+ NKS AKK++
Sbjct: 466 APELERIIESDLPNNNKQKDRYFKDKTSNLSMKENKSFSAKKVK 509
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 24.2 bits (50), Expect = 8.8
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = -2
Query: 256 SPQGSVLSPFLFSLFVNDI 200
+PQGS++SP L +++++ +
Sbjct: 421 TPQGSIVSPILANIYLHQL 439
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 253 PQGSVLSPFLFSLFVNDIPRSPP--TNLALFADDTTVYYSSRNKSLIAKKLQS 101
PQ S PF S + ++P SP TN+ + Y S ++ + K++S
Sbjct: 92 PQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRALRYLSPESQRIKNAKMKS 144
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 278 EERVPSTRYRKERFDKKSRMM 340
++++ S YR ++FDKKS+ +
Sbjct: 7 KKKLKSLEYRSKKFDKKSQSL 27
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 207 LTNKLNRKGERTEPCGLQLLEVVGKSGFPRLDIEKSGST 323
L N++ K E + C + ++G+ G R DIE+ ST
Sbjct: 1035 LKNQVEEKIEVPQRC---ISSIIGRMGSTRRDIERKTST 1070
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,504
Number of Sequences: 5004
Number of extensions: 35392
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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