Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0860X.Seq
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0037 - 604001-604957 35 0.025
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 34 0.044
02_04_0542 - 23762549-23762961,23763051-23763453 30 0.94
03_03_0249 + 15832086-15833261 29 2.2
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461... 29 2.2
01_07_0206 + 41990251-41992032,41992131-41992361 28 2.9
01_07_0137 - 41381294-41382433 28 2.9
03_01_0209 - 1647146-1647238,1647574-1647614,1647651-1647718,164... 28 3.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 6.6
>09_01_0037 - 604001-604957
Length = 318
Score = 35.1 bits (77), Expect = 0.025
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -2
Query: 415 SVRQSLAQWFDFQTIQHGRAG*SRAHHTGLLVE---PLFSISSRGNPLFPTTSNSWSPQG 245
++ + LA D H + R HH+ LL + PL +S G+P + + SP G
Sbjct: 92 TIARLLAGRTDNAIKNHWNSTLKRKHHSSLLADDLRPLKRTTSDGHPTLSSAAAPGSPSG 151
Query: 244 SVLSPFLFSLFVNDIPRSPP 185
S LS + +P SPP
Sbjct: 152 SDLSDSSHHSLPSQMPSSPP 171
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 34.3 bits (75), Expect = 0.044
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 334 TGLLVEPLFSISSRGNPLFPTTSNSWSPQGSVLSPFLFSLFVNDIPRSP 188
TG+L+ L S +SR +P+FPT+++S +P S L L+S SP
Sbjct: 3 TGMLLRGLRSAASRTSPVFPTSASSPAPYVSPLLRRLYSAAAASAAASP 51
>02_04_0542 - 23762549-23762961,23763051-23763453
Length = 271
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 271 SWGRAGSLDSISKRAVRQEVPYDEHETIRHAHVE 372
S+GR GS+D SKR + + HETI+ ++E
Sbjct: 108 SFGRTGSVDD-SKREIAAFFAHANHETIKFCYIE 140
>03_03_0249 + 15832086-15833261
Length = 391
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = -2
Query: 292 GNPLFPTTSNSWSPQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSRNKSLIAK 113
GNP+F + + G+ ++ FL F + PR P L A S S +
Sbjct: 172 GNPVFHVSDTGVAVAGANIAAFLLRAFAAEPPRGAPLRRQLSA-PMPPPAPSPAPSTARR 230
Query: 112 KLQSAALALGQWFRKW 65
L SA +W W
Sbjct: 231 SLDSATGKAPRWIEFW 246
>01_06_0850 +
32444475-32444722,32445159-32445312,32445763-32446160,
32446476-32446571,32446650-32446722,32446854-32447136,
32447225-32447556,32447642-32447912,32448502-32448783,
32449106-32449518
Length = 849
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -2
Query: 238 LSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSRNKSLIAKKLQSAALALG 83
L PF+ +N P P + +DD+ V+ + N+SL+ + + ++ G
Sbjct: 500 LDPFVIGFQLNPTPMDMPGLIIPSSDDSKVFLNYYNESLVRDETSNKIVSFG 551
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 145 YSSRNKSLIAKKLQSAALALGQWFRKWR 62
Y + +K+ ++K+ + + L LGQW WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299
>01_07_0137 - 41381294-41382433
Length = 379
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 243 EPCGLQLLEVVGKSGFPRLDIEKSGSTR 326
E CGL LLE V FP I SGS +
Sbjct: 106 EECGLSLLEAVTGRAFPLPPITSSGSKK 133
>03_01_0209 -
1647146-1647238,1647574-1647614,1647651-1647718,
1647762-1647779,1647886-1648361,1648626-1648994,
1649044-1649092,1650362-1650405,1650901-1651116
Length = 457
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 298 SRGNPLFPTTSNSWSPQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVY 146
+ G + T +++W+ GSV+ FL S + D R +L + + D T +
Sbjct: 120 ANGTVILTTLNSAWAEPGSVVDVFLESFRIGDETRWLLDHLVMVSLDLTAH 170
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 370 QHGRAG*SRAHHTGLLVEPLFSISSRGNPLFPTTSNS 260
Q+G+ S H+ GL PL +S NP FP +S
Sbjct: 3737 QNGKLDQSSVHNYGLATSPLTGMSDSNNP-FPVCVSS 3772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,710
Number of Sequences: 37544
Number of extensions: 240122
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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