Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0860X.Seq
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    55   2e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   7e-07
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    41   3e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    39   0.002
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical ...    27   5.9  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
 Frame = -2

Query: 253 PQGSVLSPFLFSLFVNDIPRSPPTNLAL--FADDTTVYYSSRNKSLIAKKLQSAALALGQ 80
           PQG+VLSP LF ++VNDI    P  +A   FADDT + Y+S  K+     LQSA  A+  
Sbjct: 78  PQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL-YASTPKTESENNLQSALDAVVD 136

Query: 79  WFRKWRIDINPAKSTAV 29
           W +  ++ +N +K+  V
Sbjct: 137 WTKGSKLTLNQSKTVHV 153



 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 24/59 (40%), Positives = 39/59 (66%)
 Frame = -3

Query: 432 FFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRLLTAG 256
           + D +KAFD++ H+ L+ KL ++    +L++ + +FLSNRSFR R+  T SS +  T G
Sbjct: 18  YLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 24/77 (31%), Positives = 43/77 (55%)
 Frame = -2

Query: 253 PQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 74
           PQGSV+SP LF+ ++ D+P    T L  +ADD ++    +     A+K+Q     + ++ 
Sbjct: 534 PQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYL 593

Query: 73  RKWRIDINPAKSTAVLF 23
           ++  + I+  KST  +F
Sbjct: 594 KERGMSISAEKSTVTVF 610


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -2

Query: 265  NSWSPQGSVLSPFLFSLFVND--IPRSPPTNLALFADDTTVYYS 140
            +S  PQGSV  P LF LF+N+  I  +P  N++ FADD  ++++
Sbjct: 878  SSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHT 921


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 265 NSWSPQGSVLSPFLFSLFVNDIPRSPPTNL--ALFADDTTVYYSS 137
           +S  P+GSV  PFLF +F+N +  S P ++  + FADD  VY  S
Sbjct: 54  SSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHS 98



 Score = 33.9 bits (74), Expect = 0.051
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 417 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRL--LTAGARKA 244
           KAFD+V H+ L+ KL + G+         DFLS+R+F  +V      P +  +++G  K 
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKV-NNHIDPNIHPISSGVPKG 60

Query: 243 LSSHP 229
             S P
Sbjct: 61  SVSGP 65


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 201 ISLTNKLNRKGERTEPCG 254
           ISLTN     GERT+PCG
Sbjct: 50  ISLTNMPKSTGERTDPCG 67


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 268 SNSWSPQGSVLSPFLFSLFVNDIPRSPPTNLAL 170
           SN  +PQ  ++SP +  L  N I +S P  LAL
Sbjct: 5   SNVTTPQAELVSPAMGELLKNAIMKSAPVALAL 37


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 208 NDIPRSPPTNLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 44
           ND+P+     L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 208 NDIPRSPPTNLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 44
           ND+P+     L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.1 protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 289 SLDSISKRAVRQEVPYDEHETIRHAHVE*FENQTIVPDFVERFCDVE 429
           S D +     RQ+VP + H    + H E    +T++    +  CD++
Sbjct: 299 SADDVFLSCCRQQVPSNCHSLCTYEHREHVAAETLIQAIQQEHCDMK 345


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 378 KLFNMGV-PDSLVLIIRDFLSNRSFRYRVEGT---RSSPRLLT 262
           + F +G+ PDS +L    FL+ + FRY V+     + SP+L++
Sbjct: 82  RCFQLGMRPDSKILYFATFLNLQLFRYSVQPRCIFQCSPKLIS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,867,021
Number of Sequences: 27780
Number of extensions: 196614
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)