Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0860X.Seq
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.48 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 417  KAFDKVWHNGLIFKLFNMG 361
            KA+ KV  N +IF+++ MG
Sbjct: 1542 KAYQKVEENEIIFEIYKMG 1560


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 256 SPQGSVLSPFLFSLFVNDIPR 194
           SPQ  V++P++  +F++ +PR
Sbjct: 331 SPQTHVMAPWVRRVFIHVLPR 351


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 380 SNYSTWACRIVSCSSYGTSCRTALFDIESREPAL 279
           S+Y    C IVSCS       T + D+  R  +L
Sbjct: 352 SDYQDAFCNIVSCSPQTVHPET-IIDVSRRRSSL 384


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 256 SPQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSR 134
           SPQ   ++P++  +F++ +PR        +  +T  Y S R
Sbjct: 335 SPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGR 375


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 256 SPQGSVLSPFLFSLFVNDIPRSPPTNLALFADDTTVYYSSR 134
           SPQ   ++P++  +F++ +PR        +  +T  Y S R
Sbjct: 335 SPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGR 375


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 92   SPRTVVPKMAHRHQPSEKYCGAISEG 15
            S RT VP++A      E Y G  + G
Sbjct: 1336 SRRTPVPRLAQDSSEDESYRGPSASG 1361


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 148 KQSCRRRIKLNWSA 189
           K+ CR+  K++W+A
Sbjct: 26  KKDCRKESKVSWAA 39


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 294 EGTRSSPRLLTAGARKALSSHPSYLAY 214
           + +  +PR     AR+  SS  SY+A+
Sbjct: 320 DASERNPRSAVLAAREITSSSCSYMAH 346


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 307 KRAVRQEVPYDEHETIRHAHV 369
           K++V++  PYDE+   R A +
Sbjct: 133 KKSVQRIKPYDEYYVWRDARI 153


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 367 VE*FENQTIVPDFVERFCDV 426
           VE +EN+  +P+  E F D+
Sbjct: 343 VEGWENRATIPELNEEFRDL 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,296
Number of Sequences: 438
Number of extensions: 2600
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)