Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0859.Seq
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 292 RPSGRWCEATIRGLCLNASKAEAS 221
           RPSG WC     GL L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 93  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 272
           +  GL R   + + ET  +K H    P S   +V      + R A A   F   PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 273 HHRPLG 290
            H P G
Sbjct: 846 IHEPTG 851


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 93  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 272
           +  GL R   + + ET  +K H    P S   +V      + R A A   F   PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 273 HHRPLG 290
            H P G
Sbjct: 846 IHEPTG 851


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 331 REEPQFRTFGSCTRPSGRWCEATIRGLCLNASKAEASLA 215
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,532
Number of Sequences: 27780
Number of extensions: 330010
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)