Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RDE6 Cluster: Putative uncharacterized protein PY0547...    35   1.0  
UniRef50_Q9TAJ6 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    35   1.3  
UniRef50_P33690 Cluster: Competence regulatory protein comQ; n=5...    35   1.3  
UniRef50_A7I436 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5; ...    33   5.4  
UniRef50_A7S4D4 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.4  

>UniRef50_Q7RDE6 Cluster: Putative uncharacterized protein PY05476;
           n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05476 - Plasmodium yoelii yoelii
          Length = 3569

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = +2

Query: 191 TKPFKYVIIIVYPKTI--LQKKVLCPLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIIN 364
           +K +K VII+  PKT    ++K+L  +   +G     KI RNN +   I+ ++D   ++ 
Sbjct: 707 SKKYKKVIILFLPKTYCCFEEKLLLSIYSLSG-----KINRNNVKEKEIILKNDKSDMLK 761

Query: 365 KLTRH----KTND*QI 400
             T+H     TND +I
Sbjct: 762 DKTKHGSLLSTNDNEI 777


>UniRef50_Q9TAJ6 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=2; stramenopiles|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Cafeteria roenbergensis
          Length = 675

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 232 LRIDNYNYIFKRLSLAFTYCFHFYYF*ISNTLMFSWRTKVTTLF---EFCTNFRLIYIYK 62
           L ++N + + K L L FT+   F  F I NTL     T  TTLF   +    FR++Y + 
Sbjct: 509 LELENLDNLIKLLPLIFTFLGAFSSFLIYNTL----NTYFTTLFLKIKLNKTFRILYTFL 564

Query: 61  NELLFF 44
           N+  FF
Sbjct: 565 NKKWFF 570


>UniRef50_P33690 Cluster: Competence regulatory protein comQ; n=5;
           Bacillus|Rep: Competence regulatory protein comQ -
           Bacillus subtilis
          Length = 299

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 25/97 (25%), Positives = 51/97 (52%)
 Frame = +3

Query: 45  KNSNSFLYI*IRRKFVQNSNNVVTLVLHENIKVFEIQK**K*KQYVNAKLSRLNM*L*LS 224
           KN ++ +Y+ ++R F   S +++ L+ H+++    +      K+    KL +  +   +S
Sbjct: 201 KNKHTLIYLYLKRLFNDASEDLLYLISHKDLYYKSLLD----KEKFQEKLIKAGVTQYIS 256

Query: 225 ILRQYYKKKCCVRSDARLEFTGYKKLNETIREIVLYY 335
           +L + YK+K C+ +  +L     KK  E I+E +L Y
Sbjct: 257 VLLEIYKQK-CISAIEQLNLDKEKK--ELIKECLLSY 290


>UniRef50_A7I436 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative
           uncharacterized protein - Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 265

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 139 LMFSWRTKVTTLFEFCTNFRL--IYIYKNELLFFSLAKTRERLDRFG 5
           L+F+++  +TT+F     FR    YI+KN+    S+   +E  DRFG
Sbjct: 206 LIFAFKLIITTMFFILNLFRFKKYYIFKNDKYIVSVEANKELKDRFG 252


>UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5;
           Oryza sativa|Rep: Putative UDP-glucose 4-epimerase -
           Oryza sativa subsp. japonica (Rice)
          Length = 408

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 261 RSDARLEFTGYKKLNETIREIVLYYDNTIH 350
           R DA + F G K + E++++ +LYYDN+++
Sbjct: 87  RFDAVVHFAGLKAVGESVQKPLLYYDNSVN 116


>UniRef50_A7S4D4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 583

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 226 IDNYNYIFKRLSLAFTYCFHFYYF*ISNTLMFSWRTKVTTLFEFC-TNFR 80
           ++N N +  R+   F  CFH Y       LM+ W+T + T F+F   NFR
Sbjct: 52  VNNLNLVIFRIFFGFMMCFHIY------RLMY-WQTTLPTTFDFAELNFR 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,071,796
Number of Sequences: 1657284
Number of extensions: 7700088
Number of successful extensions: 19772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19758
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)