Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   3.0  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   4.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   4.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.0  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   7.0  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   7.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   9.2  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 391
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 399 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 286
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 367 INETQNKRLTNI*KYNNERNARSVRGFVADCRRSSPASPAITRPRVG 507
           +N  Q  R+T+   +N +  + +   FV DC   +  SP +  P++G
Sbjct: 367 VNSMQKMRVTSPVDHNEQPESSTAEMFV-DCTIEASQSPLLHIPKLG 412


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 308 NNTRNSSILRQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALW 451
           N+ R S  L   D   I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 525 NSERISHTLELQD---ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 331 YRTISRIVSFNFLYPVNSSRASERTQHFFL*Y 236
           YR +       +LYP NS    +  +++FL Y
Sbjct: 266 YRRLKSKTEDTYLYPANSPEVKKALENWFLCY 297


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 178 YCFHFYYF*ISNTLMFSWRTKVTTLFEFCTNFRLI 74
           Y F FY       ++F ++  + TL+  C  FR I
Sbjct: 51  YHFRFYGLNTLGKIIFIFQLSILTLYICCITFRFI 85


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 136 MFSWRTKVTTLFEFCTNFRLIYIYKNELL 50
           M S++     ++EFC       ++KNE+L
Sbjct: 768 MLSFKYSANEIYEFCGTHSRAEVHKNEVL 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,531
Number of Sequences: 5004
Number of extensions: 35083
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)