Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.19 
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       32   0.34 
SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)             29   1.8  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             29   2.4  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 226 IDNYNYIFKRLSLAFTYCFHFYYF*ISNTLMFSWRTKVTTLFEFC-TNFR 80
           ++N N +  R+   F  CFH Y       LM+ W+T + T F+F   NFR
Sbjct: 353 VNNLNLVIFRIFFGFMMCFHIY------RLMY-WQTTLPTTFDFAELNFR 395


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 426 VSLIIVFSYIC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLI 298
           VSL I+       FVLC  +    C+V+CC    LF VL+ ++
Sbjct: 93  VSLYILRVMFVSLFVLCTCHRACSCNVACCVRAMLFFVLYCIV 135


>SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)
          Length = 201

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 426 VSLIIVFSYIC*SFVL-CLVNLLIICSVSCCRNI 328
           V + + F Y     VL CLVNLL++CS    RN+
Sbjct: 131 VGVFLAFPYFTGFCVLACLVNLLVLCSEKGYRNV 164


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 349 CIVLS*YRTISRIVSFNFLYPVNSSRASERTQHF--FL*YCLRIDNYNYIFKRLSLAFTY 176
           C+    YRTI    S  F Y ++    S RT HF   + Y +R+   +Y     S  FTY
Sbjct: 156 CLYPISYRTIH--FSHLFTYLIHLYPISYRTIHFSPLITYLIRLYPISYRTIHFSPLFTY 213

Query: 175 CFHFY 161
             H Y
Sbjct: 214 LIHLY 218


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 148 SNTLMFSWRTKVTTLFEFCTNFRLIYIYKNELLFFSLAK 32
           +N L+ +   K  T     TNF LI + K+ LLF  L K
Sbjct: 156 ANELLVASNCKGLTCTRKATNFGLIMVQKHPLLFLELPK 194


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 402 YIC*SFVLCLVNLLIICS 349
           Y+C + V+CL+N+L+ C+
Sbjct: 871 YLCGNMVMCLLNMLLSCA 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,751
Number of Sequences: 59808
Number of extensions: 247026
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)