Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 423 SLIIVFSYIC*SFVLCLVNLLIICSV 346
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 423 SLIIVFSYIC*SFVLCLVNLLIICSV 346
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 399 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ*T 280
           IC  + L ++ +  +   +C  NI  FL++F L+F ++ T
Sbjct: 146 ICFVWTLIIITIRNLVEWTCDSNIFTFLIIFYLVFILRFT 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,737
Number of Sequences: 27780
Number of extensions: 197061
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)