Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.090
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.090
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.16 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 0.090
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 351 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSGHNTFFCSIVLG*TIIITYLN 199
           +V  C  I   + +  L+F+ + TPVVR SG      +I+L   +++ YLN
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASGRE---LTIILLAGVLVCYLN 567


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 0.090
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 351 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSGHNTFFCSIVLG*TIIITYLN 199
           +V  C  I   + +  L+F+ + TPVVR SG      +I+L   +++ YLN
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASGRE---LTIILLAGVLVCYLN 657


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 194 KPFKYVIIIVYPKTILQKKVLCP 262
           KPF YV  I + ++ L +++LCP
Sbjct: 422 KPFVYVREIAFSESCLPEEILCP 444


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 118 KVTTLFEFCTNFRLIYIYKNE 56
           KVT L+EF  N  L++I  N+
Sbjct: 103 KVTRLYEFSDNELLVHISTNK 123


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 415 NERNARSVRGFVADCRRSSPASPAITRPRVGS 510
           N  +A+    F   CR  SP++P+ITR  + S
Sbjct: 317 NVMSAKYRNAFKETCR-CSPSNPSITRTGLSS 347


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 354 CSVSCCRNIELFLVLFRLIFYI 289
           C +SC  NI   ++L   +FY+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -2

Query: 363 LIICSVSCCRNIELFLVLFRLIFYI 289
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFM 340


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 354 CSVSCCRNIELFLVLFRLIFYI 289
           C +SC  NI   ++L   +FY+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -2

Query: 363 LIICSVSCCRNIELFLVLFRLIFYI 289
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFM 393


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 233 TILQKKVLCPLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLT 373
           T+ +  +LC L RT     I +++ N   + + L+ +D  Q+I + T
Sbjct: 447 TLEKFMILCNLMRTMNRKQISELESNMQISPNELKPNDKSQVIKQNT 493


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 405 SYIC*SFVLCLVNLLIICSVSCCR 334
           S++    +LC  ++L +C++S  R
Sbjct: 113 SWVSLDILLCTASILSLCAISIDR 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,156
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)