Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0856X.Seq
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    29   1.9  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.4  
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP...    28   4.5  
At5g65790.1 68418.m08278 myb family transcription factor (MYB68)...    27   5.9  

>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 267 DARLEFTGYKKLNETIREIVLYYDNTI 347
           DA + F G K + E++ + +LYY+N I
Sbjct: 80  DAVIHFAGLKAVGESVEKPLLYYNNNI 106


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 267 DARLEFTGYKKLNETIREIVLYYDNTI 347
           DA + F G K + E++ + +LYY+N +
Sbjct: 81  DAVIHFAGLKAVGESVEKPLLYYNNNL 107


>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
          Length = 348

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 267 DARLEFTGYKKLNETIREIVLYYDNTI 347
           DA + F G K + E++ + +LYY+N +
Sbjct: 80  DAVMHFAGLKAVGESVAKPLLYYNNNL 106


>At5g65790.1 68418.m08278 myb family transcription factor (MYB68)
           identical to putative transcription factor (MYB68)
           GI:3941493 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00249 myb-like DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 18  SRSRVLARLKNSNSFLYI*IRRKFVQNSNNVVTLVLHENIKVF 146
           S+ + + +   S++F    I   F+ N+NN+V L   EN KV+
Sbjct: 281 SQQQEILQWFGSSNFQTEAINDMFINNNNNIVNLETIENTKVY 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,400,147
Number of Sequences: 28952
Number of extensions: 161261
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)