Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0854.Seq
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.9  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -1

Query: 615 VCALTHSFIICLTSFFCVKLTPRASPWYTVVK*SLKRTGSGFVNQQTWHLRIMFWSSFHY 436
           +C  T + +ICL ++F   L    SP   + +        G        L   FWS+ ++
Sbjct: 181 ICTKTRASLICLLAWFIAALF--TSPMLVIAEYKQLDYFDGSKVPACHTLANTFWSALYF 238

Query: 435 HSIV 424
            +I+
Sbjct: 239 LTII 242


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 494 PDPVRFKDYLTTVYHGEARGVNFTQKNEVKQMINEWV 604
           PD    K +L    H E    + TQKN  K+++   +
Sbjct: 58  PDGAELKRHLPDALHTECSKCSETQKNGSKKIMRHLI 94


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 627 IFACVCALTHSFIICLTSFFCV-KLTPRASPWY 532
           I  C+     +FII  T F+C   L P  S +Y
Sbjct: 294 ILLCIYYFCRAFIIFPTHFYCAFSLYPLKSTFY 326


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  LSVL*TYHRNMV*HYGRSNNKSKFFRGSISTKLFGRL 209
           +++L +YH+    HYGR   +S     SIS +   R+
Sbjct: 786 MNLLRSYHQQQSHHYGR-RERSGSESSSISERCSSRV 821


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,036
Number of Sequences: 336
Number of extensions: 4038
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)