Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0854.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.68 
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.68 
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.68 
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    28   1.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.3  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   6.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.3  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   8.3  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 233  NLYPKLLTESAK*FG*N*ASEEFAFVVTPSIVLHHVPMISLQHRKNWIFRRIS 75
            NL+P L +   K FG + A+ ++A  +TP  + H   M + +  KNW  R  S
Sbjct: 1522 NLFPTLDSSPNKKFGRHLATFKYALELTPLFISH---MYNYKTNKNWQDRTAS 1571


>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 538 VVHGRQIIFKTDRIRV-CESTNMASTYN 458
           V++G  ++ K DR    C STNMASTY+
Sbjct: 66  VLNGLPLLKKRDRYTTQCHSTNMASTYD 93


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 538 VVHGRQIIFKTDRIRV-CESTNMASTYN 458
           V++G  ++ K DR    C STNMASTY+
Sbjct: 66  VLNGLPLLKKRDRYTTQCHSTNMASTYD 93


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 303 LAMTLLGSVGSTYDELATSLG---FSQDILANRN 395
           L +T +GSV   YD L T++G   F QD +  +N
Sbjct: 708 LRLTKVGSVQQAYDVLTTAMGAILFDQDTIKRQN 741


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 627 IFACVCALTHSFIICLTSFFCVKLTPRASPWY 532
           +F+ VCA     I C   FF ++ TP + PW+
Sbjct: 203 LFSMVCA-----IYCYVRFFKLRHTPFSRPWW 229


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 489 VNQQTWHLRIMFWSSFHYHSIVEAAHQTARGGFD 388
           VN+ T +L   FW   HY S +  A Q A  GFD
Sbjct: 277 VNRVTPYLE-RFWFKCHYGSKLGTALQVAGPGFD 309


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 193 NYLADSVNNFGYKLLLKMIEQTRMKTSHCLRPVLLDYW 306
           N+++++ + F      K+++   MKTS  L    +DYW
Sbjct: 634 NFVSEAFSYFDMVPFEKVVQLLSMKTSDTLFVDFVDYW 671


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 572 NEVKQMINEWVKAQTQAKIEDFLKQSLPEATKVVLLSALYFSGQWASPFYP 724
           N +K+  NE     +Q  +++  + S PE  +V   S + F       FYP
Sbjct: 268 NVIKEKSNEVDHKDSQHVVDEVAQTSPPEVKEVETQSMMIFDDTNTLGFYP 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,753
Number of Sequences: 5004
Number of extensions: 65506
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)