Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0854.Seq
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 59 4e-09
01_01_1152 + 9170628-9171899 47 1e-05
11_02_0011 - 7337618-7338496,7338596-7338991 45 5e-05
11_01_0767 + 6438648-6438809,6439146-6440000 45 5e-05
11_02_0014 - 7352619-7352918,7353173-7353418 43 2e-04
11_02_0012 - 7346282-7347136,7347234-7347593 43 3e-04
11_01_0750 - 6315126-6315896,6316371-6316784 41 0.001
11_01_0771 + 6453130-6454488 40 0.002
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 40 0.002
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.003
05_06_0044 - 25150322-25151260 35 0.057
03_05_0294 + 22855503-22855946,22856346-22856399 33 0.17
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745... 31 0.70
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +2
Query: 533 YHGEARGVNFTQK-NEVKQMINEWVKAQTQAKIEDFL-KQSLPEATKVVLLSALYFSGQW 706
Y EAR V+F K E ++ INEW ++ T +I+DFL K ++ AT VL +ALYF G W
Sbjct: 125 YRAEARPVSFRDKLEEARREINEWFESATAGRIKDFLPKDAVDRATPAVLGNALYFKGDW 184
Query: 707 ASPF 718
S F
Sbjct: 185 ESKF 188
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 261 NENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG 365
++N+A+SP + LA+ G+ G T D++ LG
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLG 65
>01_01_1152 + 9170628-9171899
Length = 423
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 509 FKDYLTTVYHGEARGVNF-TQKNEVKQMINEWVKAQTQAKIEDFLK-QSLPEATKVVLLS 682
F D + Y A +F TQ + ++ +N +V T+ I D L S+ +T VVL +
Sbjct: 135 FADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLAN 194
Query: 683 ALYFSGQWASPFYP 724
A++F G W+ PF+P
Sbjct: 195 AVHFKGTWSLPFHP 208
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 533 YHGEARGVNFT-QKNEVKQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQW 706
Y R NF Q ++ IN+WV T I + L S+ T +VL++A+YF G+W
Sbjct: 120 YKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKW 179
Query: 707 ASPF 718
++PF
Sbjct: 180 SNPF 183
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 255 NENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG 365
+ N+N+ SP + LA+ G+ G+T DEL LG
Sbjct: 28 SSNKNLVFSPASLYAALALVAAGARGTTLDELLALLG 64
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 509 FKDYLTTVYHGEARGVNFTQKN-EVKQMINEWVKAQTQAKIEDFLK-QSLPEATKVVLLS 682
++D + Y G A V+F E ++ IN WV T+ I + +K +S T+ V+ +
Sbjct: 34 YRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGN 93
Query: 683 ALYFSGQWASPF 718
A+YF G+W +PF
Sbjct: 94 AIYFKGEWLAPF 105
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 581 KQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQWASPF 718
++ INEWV T I + L S+ T +VL++A+YF G+W+ PF
Sbjct: 87 RKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPF 133
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 246 DRANENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFS 371
D N N N+ S + LA+ G G+T EL LG S
Sbjct: 27 DDVNNNRNLVFSLVSLYAALALVAAGGQGTTLHELLALLGAS 68
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 566 QKNEVKQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQWASPF 718
Q ++ IN+WV T I + L S+ T +VL++A+YF G+W++PF
Sbjct: 120 QPKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPF 171
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 243 NDRANENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG 365
+D N N N+ SP + LA+ G+ G+T DEL LG
Sbjct: 24 DDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG 64
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 530 VYHGEARGVNFTQKNE-VKQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQ 703
VY A+ +F K E IN WVK T+ + L ++ + T +VL SALYF G+
Sbjct: 125 VYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGR 184
Query: 704 W 706
W
Sbjct: 185 W 185
>11_01_0771 + 6453130-6454488
Length = 452
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 575 EVKQMINEWVKAQTQAKIEDFLK-QSLPEATKVVLLSALYFSGQWASPF 718
E ++ IN W + T I D L +S+ T VVL +A+YF G+W PF
Sbjct: 172 EARKQINAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPF 220
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 225 VQITFKNDRANENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG-FSQDILA 386
V++ + A+ N+A SP + L++ G+ G T DE+ LG S+D LA
Sbjct: 24 VRLADRLGAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDDLA 78
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 575 EVKQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQWASPF 718
EV +N WV+ T I++ L S+ T++VL +ALYF G W F
Sbjct: 212 EVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 575 EVKQMINEWVKAQTQAKIEDFLK-QSLPEATKVVLLSALYFSGQWASPF 718
EV +N WV T I++ +S+ TK+VL +ALYF G WA F
Sbjct: 464 EVLGQVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKF 512
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +3
Query: 267 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQLNDNET 446
N+A SP + L++ G+ G+T D+LA++LG EQ +L+
Sbjct: 36 NVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGAG 95
Query: 447 NSKTLYVDAMFVDSQTRIR 503
+ + D +FVD+ ++
Sbjct: 96 GPRVAFADGVFVDASLSLK 114
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 575 EVKQMINEWVKAQTQAKIEDFLKQ-SLPEATKVVLLSALYFSGQWASPF 718
EV +N WV T I++ L S+ T++VL +ALYF G W F
Sbjct: 4 EVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKF 52
>05_06_0044 - 25150322-25151260
Length = 312
Score = 35.1 bits (77), Expect = 0.057
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Frame = +2
Query: 509 FKDYLTTVYHGEARGVNFTQKNEVKQMINEWVKAQTQAKIEDFLKQSLPE---------- 658
F D +V+ R + INEW +QT ++D L S+ +
Sbjct: 15 FADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILSNSIDDDDDGSGGGGG 72
Query: 659 --ATKVVLLSALYFSGQWASPFYP 724
+ V L ++LYF+ W PF+P
Sbjct: 73 AISASVFLANSLYFNAYWDHPFFP 96
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 267 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNH--HEQFGELLQQLNDN 440
N+A SP + L++ G+ G+T D+L + LG A H EQ +L+ +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 441 ETNSKTLYVDAMFVDSQTRIRSVLK 515
+ + D +F+DS + K
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFK 129
>07_01_1105 -
10173039-10173156,10173715-10173716,10174550-10174584,
10174696-10174765,10175163-10176707,10176770-10178062
Length = 1020
Score = 31.5 bits (68), Expect = 0.70
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 490 KPGSGPF*RLFDDRVPRGS-PRCQLHTKERS-QTNDK*VGQSANAGKN*RFFKTITTRGN 663
+PG G VP S PRCQ+H +ER Q + V QS G+ R + + G
Sbjct: 163 RPGDGAARPAVGALVPSSSLPRCQIHGRERDLQRVVEMVCQSQPDGR--RNYAVVAIVG- 219
Query: 664 KGGIAKRSLLQRTMG 708
G+ K SL+Q G
Sbjct: 220 MAGVGKTSLMQHVCG 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,203
Number of Sequences: 37544
Number of extensions: 401508
Number of successful extensions: 1078
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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