Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0854.Seq
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 45 5e-05
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 42 4e-04
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 38 0.011
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 533 YHGEARGVNFTQKN-EVKQMINEWVKAQTQAKIEDFLKQSLPEA-TKVVLLSALYFSGQW 706
YH E V+F K + ++ +N WV QT+ I++ + + + T++++++A+YF G W
Sbjct: 81 YHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVW 140
Query: 707 ASPF 718
F
Sbjct: 141 KKEF 144
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 509 FKDYLTTVYHGEARGVNF-TQKNEVKQMINEWVKAQTQAKIEDFLKQSLPEA-TKVVLLS 682
F D Y + V++ T ++ +N+WV+ +T+ KI D + + T++ L++
Sbjct: 68 FTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLTLVN 127
Query: 683 ALYFSGQWASPF 718
A+YF G W PF
Sbjct: 128 AIYFKGMWDKPF 139
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 509 FKDYLTTVYHGEARGVNFTQK-NEVKQMINEWVKAQTQAKIEDFLKQSL-PEATKVVLLS 682
FK + E V++ + N + +N WV+ +T+ KI++ + + + + T + L++
Sbjct: 105 FKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVN 164
Query: 683 ALYFSGQWASPF 718
A+YF G W F
Sbjct: 165 AVYFKGSWMKHF 176
Score = 35.5 bits (78), Expect = 0.044
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 267 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQLN-DNE 443
N+ SP I LAMT LG+ G+T ++ + F D+ E+F + LQ LN N
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDV------PEKFHDFLQALNASNS 82
Query: 444 TNSKTLYVDAMF 479
++ L + +F
Sbjct: 83 DGNQILMANRLF 94
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 681 LSNTTFVASGSDCFKKSSIFACVCALTHSFIICLTSFFCVKLTPRASPWYTVVK*SLKRT 502
L+ + + S+C ++F+ +C L F C + F C+++ +A P + V S
Sbjct: 693 LATYSCIPEASNCTANKTLFSALCGLRDMF--CPSLFKCIRMN-QACPDFPVGNYSGNDN 749
Query: 501 GSGFV 487
G+GF+
Sbjct: 750 GTGFL 754
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 229 KLLLKMIEQTRMKTSHCLRP-VLLDYWQ*H--FSVVWEVHTTSSPQASVFL---KTY 381
++L +M+ R SHCLRP ++L Q H +S V +TT + Q + + KTY
Sbjct: 2809 RVLFRMVSDIRSPPSHCLRPGLILALHQRHANWSEVALYYTTQTTQLTTTIFSKKTY 2865
>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 103 LCCKLIIGTWCNTMDGVTTKANSSEAQFQPNYLADS 210
L C + I WC + VTTK +E Y A+S
Sbjct: 474 LLCSMAIWRWCCRLFLVTTKQQKTETHTHAKYSAES 509
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 116 SLQHRKNWIFRRISTAVQSESEQNNIGRAYLINKTRL 6
SL H +N + IST S+S Q I +IN T+L
Sbjct: 1203 SLGHTRNTMKELISTTTTSDSTQKAINPLQIINLTKL 1239
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -1
Query: 468 LRIMFWSS-----FHYHSIVEAAHQTARGGFDWPICLEKNRGLWRARRMYFPHYREVSLP 304
LRI WS+ + +H+ AR PICL NRG + +Y YR+V P
Sbjct: 595 LRINDWSNIDTQLYSFHTAGSGIRSLARESQPVPICLSWNRGAC-SSPVYPCRYRQVREP 653
Query: 303 VIQQYRSETM 274
+ S+++
Sbjct: 654 TPLEKMSQSL 663
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,893,442
Number of Sequences: 59808
Number of extensions: 495108
Number of successful extensions: 1297
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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